RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 C10orf95Q9H7T3 257 aa7.91□□□□□ -1.14
LIME1-203ENST00000465591 TNP1P09430 55 aa7.87□□□□□ -1.15
LIME1-203ENST00000465591 MT1GP13640 62 aa7.82□□□□□ -1.16
LIME1-203ENST00000465591 LCE3AQ5TA76 89 aa7.79□□□□□ -1.16
LIME1-203ENST00000465591 MT1LQ93083 61 aa7.77□□□□□ -1.17
LIME1-203ENST00000465591 CDC42SE1Q9NRR8 79 aa7.76□□□□□ -1.17
LIME1-203ENST00000465591 MT1MQ8N339 61 aa7.74□□□□□ -1.17
LIME1-203ENST00000465591 KRTAP4-9Q9BYQ8 210 aa7.74□□□□□ -1.17
LIME1-203ENST00000465591 PP632Q6XCG6 107 aa7.71□□□□□ -1.18
LIME1-203ENST00000465591 KRTAP25-1Q3LHN0 102 aa7.65□□□□□ -1.18
LIME1-203ENST00000465591 KRTAP4-3Q9BYR4 195 aa7.62□□□□□ -1.19
LIME1-203ENST00000465591 LCE1DQ5T752 114 aa7.55□□□□□ -1.2
LIME1-203ENST00000465591 GPR98Q8WXG9 6306 aa7.54□□□□□ -1.2
LIME1-203ENST00000465591 ROMO1P60602 79 aa7.5□□□□□ -1.21
LIME1-203ENST00000465591 BRK1Q8WUW1 75 aa7.49□□□□□ -1.21
LIME1-203ENST00000465591 LCE4AQ5TA78 99 aa7.48□□□□□ -1.21
LIME1-203ENST00000465591 KRTAP12-3P60328 96 aa7.46□□□□□ -1.22
LIME1-203ENST00000465591 MT4P47944 62 aa7.45□□□□□ -1.22
LIME1-203ENST00000465591 KRTAP4-7Q9BYR0 210 aa7.44□□□□□ -1.22
LIME1-203ENST00000465591 HMCN1Q96RW7 5635 aa7.41□□□□□ -1.22
LIME1-203ENST00000465591 KRTAP23-1A1A580 65 aa7.39□□□□□ -1.23
LIME1-203ENST00000465591 KRTAP5-4Q6L8H1 288 aa7.39□□□□□ -1.23
LIME1-203ENST00000465591 KRTAP4-6Q9BYQ5 205 aa7.27□□□□□ -1.25
LIME1-203ENST00000465591 PRO0628Q9UI54 55 aa7.22□□□□□ -1.25
LIME1-203ENST00000465591 AHNAK2Q8IVF2 5795 aa7.19□□□□□ -1.26
LIME1-203ENST00000465591 PMAIP1Q13794 54 aa7.13□□□□□ -1.27
LIME1-203ENST00000465591 KRTAP5-5Q701N2 237 aaPredicted RBP7.12□□□□□ -1.27
LIME1-203ENST00000465591 LOC100996750A0A140TA64 210 aa7.04□□□□□ -1.28
LIME1-203ENST00000465591 KRTAP19-4Q3LI73 84 aa7.03□□□□□ -1.28
LIME1-203ENST00000465591 KRTAP15-1Q3LI76 137 aa7.03□□□□□ -1.28
LIME1-203ENST00000465591 KRTAP5-10Q6L8G5 202 aa7.02□□□□□ -1.29
LIME1-203ENST00000465591 KRTAP20-2Q3LI61 65 aa6.98□□□□□ -1.29
LIME1-203ENST00000465591 SYNE1Q8NF91 8797 aaKnown RBP6.9□□□□□ -1.3
LIME1-203ENST00000465591 SPRR5A0A1B0GTR4 108 aa6.9□□□□□ -1.3
LIME1-203ENST00000465591 LCE3CQ5T5A8 94 aa6.87□□□□□ -1.31
LIME1-203ENST00000465591 KRTAP5-3Q6L8H2 238 aa6.86□□□□□ -1.31
LIME1-203ENST00000465591 KRTAP12-4P60329 112 aa6.85□□□□□ -1.31
LIME1-203ENST00000465591 KRTAP5-7Q6L8G8 165 aa6.73□□□□□ -1.33
LIME1-203ENST00000465591 KTN1-AS1Q86SY8 53 aa6.72□□□□□ -1.33
LIME1-203ENST00000465591 MT1AP04731 61 aa6.59□□□□□ -1.35
LIME1-203ENST00000465591 KRTAP6-1Q3LI64 71 aa6.59□□□□□ -1.35
LIME1-203ENST00000465591 PRAC1Q96KF2 57 aa6.59□□□□□ -1.35
LIME1-203ENST00000465591 KRTAP9-6A8MVA2 160 aa6.57□□□□□ -1.36
LIME1-203ENST00000465591 KRTAP5-2Q701N4 177 aa6.48□□□□□ -1.37
LIME1-203ENST00000465591 KRTAP9-4Q9BYQ2 154 aa6.36□□□□□ -1.39
LIME1-203ENST00000465591 KRTAP4-11Q9BYQ6 195 aa6.36□□□□□ -1.39
LIME1-203ENST00000465591 KRTAP6-2Q3LI66 62 aa6.28□□□□□ -1.4
LIME1-203ENST00000465591 SVIPQ8NHG7 77 aa6.28□□□□□ -1.4
LIME1-203ENST00000465591 KRTAP5-8O75690 187 aa6.17□□□□□ -1.42
LIME1-203ENST00000465591 OBSCNQ5VST9 7968 aa6.07□□□□□ -1.44
LIME1-203ENST00000465591 MT3P25713 68 aa6□□□□□ -1.45
LIME1-203ENST00000465591 AHNAKQ09666 5890 aaKnown RBP5.89□□□□□ -1.47
LIME1-203ENST00000465591 MUC5BQ9HC84 5762 aaPredicted RBP5.89□□□□□ -1.47
LIME1-203ENST00000465591 MUC5ACP98088 5654 aa5.87□□□□□ -1.47
LIME1-203ENST00000465591 KRTAP5-1Q6L8H4 278 aa5.82□□□□□ -1.48
LIME1-203ENST00000465591 KRTAP9-9Q9BYP9 154 aa5.8□□□□□ -1.48
LIME1-203ENST00000465591 LUZP6Q538Z0 58 aa5.59□□□□□ -1.51
LIME1-203ENST00000465591 LCE1EQ5T753 118 aa5.51□□□□□ -1.53
LIME1-203ENST00000465591 KRTAP4-2Q9BYR5 136 aa5.28□□□□□ -1.56
LIME1-203ENST00000465591 LCE1BQ5T7P3 118 aa5.22□□□□□ -1.57
LIME1-203ENST00000465591 LCE1CQ5T751 118 aa5.12□□□□□ -1.59
LIME1-203ENST00000465591 NDUFAF8A1L188 74 aa5.1□□□□□ -1.59
LIME1-203ENST00000465591 LCE3DQ9BYE3 92 aa5.02□□□□□ -1.61
LIME1-203ENST00000465591 LCE3EQ5T5B0 92 aa4.8□□□□□ -1.64
LIME1-203ENST00000465591 KRTAP4-12Q9BQ66 201 aa4.8□□□□□ -1.64
LIME1-203ENST00000465591 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.67□□□□□ -1.66
LIME1-203ENST00000465591 KRTAP5-11Q6L8G4 156 aa4.65□□□□□ -1.67
LIME1-203ENST00000465591 A0A0A0MQY5 61 aa4.5□□□□□ -1.69
LIME1-203ENST00000465591 LCE1FQ5T754 118 aa4.49□□□□□ -1.69
LIME1-203ENST00000465591 KRTAP21-2Q3LI59 83 aa4.34□□□□□ -1.71
LIME1-203ENST00000465591 INE1O15225 51 aa4.33□□□□□ -1.72
LIME1-203ENST00000465591 PHGR1C9JFL3 82 aa4.07□□□□□ -1.76
LIME1-203ENST00000465591 KRTAP4-4Q9BYR3 166 aa4.01□□□□□ -1.77
LIME1-203ENST00000465591 H3BS24 57 aa3.84□□□□□ -1.79
LIME1-203ENST00000465591 PRM1P04553 51 aa3.83□□□□□ -1.8
LIME1-203ENST00000465591 MUC19Q7Z5P9 8384 aa3.76□□□□□ -1.81
LIME1-203ENST00000465591 KRTAP21-1Q3LI58 79 aa3.06□□□□□ -1.92
LIME1-203ENST00000465591 MUC16Q8WXI7 14507 aa2.68□□□□□ -1.98
Retrieved 78 of 20,778 RNA–protein pairs in 72.7 ms