RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 GPR98Q8WXG9 6306 aa6.62□□□□□ -1.35
CPSF4-209ENST00000465132 KRTAP23-1A1A580 65 aa6.55□□□□□ -1.36
CPSF4-209ENST00000465132 LCE3AQ5TA76 89 aa6.52□□□□□ -1.37
CPSF4-209ENST00000465132 DSTQ03001 7570 aaKnown RBP6.51□□□□□ -1.37
CPSF4-209ENST00000465132 PP632Q6XCG6 107 aa6.46□□□□□ -1.38
CPSF4-209ENST00000465132 LCE5AQ5TCM9 118 aa6.44□□□□□ -1.38
CPSF4-209ENST00000465132 KRTAP19-5Q3LI72 72 aa6.43□□□□□ -1.38
CPSF4-209ENST00000465132 PMAIP1Q13794 54 aa6.42□□□□□ -1.38
CPSF4-209ENST00000465132 KRTAP19-7Q3SYF9 63 aa6.42□□□□□ -1.38
CPSF4-209ENST00000465132 KRTAP4-9Q9BYQ8 210 aa6.42□□□□□ -1.38
CPSF4-209ENST00000465132 PRO0628Q9UI54 55 aa6.39□□□□□ -1.39
CPSF4-209ENST00000465132 MT1EP04732 61 aa6.38□□□□□ -1.39
CPSF4-209ENST00000465132 KRTAP19-3Q7Z4W3 81 aa6.37□□□□□ -1.39
CPSF4-209ENST00000465132 KRTAP12-3P60328 96 aa6.35□□□□□ -1.39
CPSF4-209ENST00000465132 LCE1DQ5T752 114 aa6.24□□□□□ -1.41
CPSF4-209ENST00000465132 MT1GP13640 62 aa6.22□□□□□ -1.41
CPSF4-209ENST00000465132 KRTAP19-4Q3LI73 84 aa6.21□□□□□ -1.42
CPSF4-209ENST00000465132 MT1LQ93083 61 aa6.18□□□□□ -1.42
CPSF4-209ENST00000465132 HMCN1Q96RW7 5635 aa6.16□□□□□ -1.42
CPSF4-209ENST00000465132 LCE4AQ5TA78 99 aa6.14□□□□□ -1.43
CPSF4-209ENST00000465132 MT4P47944 62 aa6.12□□□□□ -1.43
CPSF4-209ENST00000465132 KRTAP15-1Q3LI76 137 aa6.12□□□□□ -1.43
CPSF4-209ENST00000465132 MT1MQ8N339 61 aa6.08□□□□□ -1.44
CPSF4-209ENST00000465132 AHNAK2Q8IVF2 5795 aa6.06□□□□□ -1.44
CPSF4-209ENST00000465132 KRTAP5-4Q6L8H1 288 aa5.98□□□□□ -1.45
CPSF4-209ENST00000465132 KTN1-AS1Q86SY8 53 aa5.98□□□□□ -1.45
CPSF4-209ENST00000465132 KRTAP5-10Q6L8G5 202 aa5.95□□□□□ -1.46
CPSF4-209ENST00000465132 KRTAP4-3Q9BYR4 195 aa5.95□□□□□ -1.46
CPSF4-209ENST00000465132 KRTAP4-6Q9BYQ5 205 aa5.92□□□□□ -1.46
CPSF4-209ENST00000465132 LCE3CQ5T5A8 94 aa5.9□□□□□ -1.46
CPSF4-209ENST00000465132 PRAC1Q96KF2 57 aa5.9□□□□□ -1.46
CPSF4-209ENST00000465132 KRTAP4-7Q9BYR0 210 aa5.8□□□□□ -1.48
CPSF4-209ENST00000465132 KRTAP5-7Q6L8G8 165 aa5.77□□□□□ -1.49
CPSF4-209ENST00000465132 KRTAP5-3Q6L8H2 238 aa5.74□□□□□ -1.49
CPSF4-209ENST00000465132 SVIPQ8NHG7 77 aa5.68□□□□□ -1.5
CPSF4-209ENST00000465132 KRTAP20-2Q3LI61 65 aa5.66□□□□□ -1.5
CPSF4-209ENST00000465132 SPRR5A0A1B0GTR4 108 aa5.61□□□□□ -1.51
CPSF4-209ENST00000465132 KRTAP5-5Q701N2 237 aaPredicted RBP5.61□□□□□ -1.51
CPSF4-209ENST00000465132 KRTAP12-4P60329 112 aa5.53□□□□□ -1.52
CPSF4-209ENST00000465132 LOC100996750A0A140TA64 210 aa5.48□□□□□ -1.53
CPSF4-209ENST00000465132 SYNE1Q8NF91 8797 aaKnown RBP5.4□□□□□ -1.55
CPSF4-209ENST00000465132 KRTAP9-6A8MVA2 160 aa5.39□□□□□ -1.55
CPSF4-209ENST00000465132 MT1AP04731 61 aa5.3□□□□□ -1.56
CPSF4-209ENST00000465132 KRTAP4-11Q9BYQ6 195 aa5.25□□□□□ -1.57
CPSF4-209ENST00000465132 KRTAP5-2Q701N4 177 aa5.19□□□□□ -1.58
CPSF4-209ENST00000465132 KRTAP6-1Q3LI64 71 aa5.17□□□□□ -1.58
CPSF4-209ENST00000465132 LUZP6Q538Z0 58 aa5.16□□□□□ -1.58
CPSF4-209ENST00000465132 AHNAKQ09666 5890 aaKnown RBP5.1□□□□□ -1.59
CPSF4-209ENST00000465132 KRTAP5-8O75690 187 aa5.08□□□□□ -1.6
CPSF4-209ENST00000465132 KRTAP9-4Q9BYQ2 154 aa5.08□□□□□ -1.6
CPSF4-209ENST00000465132 MUC5ACP98088 5654 aa5.05□□□□□ -1.6
CPSF4-209ENST00000465132 MUC5BQ9HC84 5762 aaPredicted RBP5.04□□□□□ -1.6
CPSF4-209ENST00000465132 KRTAP6-2Q3LI66 62 aa4.95□□□□□ -1.62
CPSF4-209ENST00000465132 OBSCNQ5VST9 7968 aa4.89□□□□□ -1.63
CPSF4-209ENST00000465132 MT3P25713 68 aa4.89□□□□□ -1.63
CPSF4-209ENST00000465132 KRTAP9-9Q9BYP9 154 aa4.86□□□□□ -1.63
CPSF4-209ENST00000465132 KRTAP5-1Q6L8H4 278 aa4.71□□□□□ -1.66
CPSF4-209ENST00000465132 NDUFAF8A1L188 74 aa4.5□□□□□ -1.69
CPSF4-209ENST00000465132 LCE1EQ5T753 118 aa4.4□□□□□ -1.71
CPSF4-209ENST00000465132 LCE3DQ9BYE3 92 aa4.38□□□□□ -1.71
CPSF4-209ENST00000465132 LCE3EQ5T5B0 92 aa4.21□□□□□ -1.74
CPSF4-209ENST00000465132 KRTAP4-2Q9BYR5 136 aa4.19□□□□□ -1.74
CPSF4-209ENST00000465132 LCE1BQ5T7P3 118 aa4.16□□□□□ -1.74
CPSF4-209ENST00000465132 LCE1CQ5T751 118 aa4.08□□□□□ -1.76
CPSF4-209ENST00000465132 A0A0A0MQY5 61 aa4.01□□□□□ -1.77
CPSF4-209ENST00000465132 KRTAP4-12Q9BQ66 201 aa3.9□□□□□ -1.79
CPSF4-209ENST00000465132 INE1O15225 51 aa3.85□□□□□ -1.79
CPSF4-209ENST00000465132 KRTAP5-11Q6L8G4 156 aa3.72□□□□□ -1.81
CPSF4-209ENST00000465132 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.72□□□□□ -1.81
CPSF4-209ENST00000465132 LCE1FQ5T754 118 aa3.69□□□□□ -1.82
CPSF4-209ENST00000465132 PHGR1C9JFL3 82 aa3.47□□□□□ -1.85
CPSF4-209ENST00000465132 KRTAP21-2Q3LI59 83 aa3.4□□□□□ -1.87
CPSF4-209ENST00000465132 PRM1P04553 51 aa3.38□□□□□ -1.87
CPSF4-209ENST00000465132 H3BS24 57 aa3.33□□□□□ -1.88
CPSF4-209ENST00000465132 KRTAP4-4Q9BYR3 166 aa3.14□□□□□ -1.91
CPSF4-209ENST00000465132 MUC19Q7Z5P9 8384 aa3.05□□□□□ -1.92
CPSF4-209ENST00000465132 KRTAP21-1Q3LI58 79 aa2.64□□□□□ -1.99
CPSF4-209ENST00000465132 MUC16Q8WXI7 14507 aa2.15□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 13.9 ms