RNA–Protein interactions for RNA: ENST00000452489.6

PTPA-223, Transcript of protein phosphatase 2 phosphatase activator, human

TSL 1 (best) BASIC

Gene PTPA, Length 2,526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPA-223	ENST00000452489	KRTAP4-3	Q9BYR4	195 aa		5.85	□□□□□ -1.47
PTPA-223	ENST00000452489	MT1G	P13640	62 aa		5.82	□□□□□ -1.48
PTPA-223	ENST00000452489	CRCT1	Q9UGL9	99 aa		5.79	□□□□□ -1.48
PTPA-223	ENST00000452489	KRTAP4-9	Q9BYQ8	210 aa		5.72	□□□□□ -1.49
PTPA-223	ENST00000452489	KRTAP9-2	Q9BYQ4	174 aa		5.69	□□□□□ -1.5
PTPA-223	ENST00000452489	KRTAP9-7	A8MTY7	169 aa		5.66	□□□□□ -1.5
PTPA-223	ENST00000452489	SSPO	A2VEC9	5147 aa		5.64	□□□□□ -1.51
PTPA-223	ENST00000452489	PRM1	P04553	51 aa		5.63	□□□□□ -1.51
PTPA-223	ENST00000452489	LCE3B	Q5TA77	95 aa		5.62	□□□□□ -1.51
PTPA-223	ENST00000452489	SYNE1	Q8NF91	8797 aa	Known RBP	5.55	□□□□□ -1.52
PTPA-223	ENST00000452489	KRTAP6-3	Q3LI67	103 aa		5.54	□□□□□ -1.52
PTPA-223	ENST00000452489	KRTAP5-5	Q701N2	237 aa	Predicted RBP	5.53	□□□□□ -1.52
PTPA-223	ENST00000452489	KRTAP9-6	A0A140TA67	174 aa		5.5	□□□□□ -1.53
PTPA-223	ENST00000452489	MT1M	Q8N339	61 aa		5.47	□□□□□ -1.53
PTPA-223	ENST00000452489	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	5.47	□□□□□ -1.53
PTPA-223	ENST00000452489	DST	Q03001	7570 aa	Known RBP	5.44	□□□□□ -1.54
PTPA-223	ENST00000452489	LCE2D	Q5TA82	110 aa	Predicted RBP	5.43	□□□□□ -1.54
PTPA-223	ENST00000452489	LCE3D	Q9BYE3	92 aa		5.42	□□□□□ -1.54
PTPA-223	ENST00000452489	MUC12	Q9UKN1	5478 aa		5.42	□□□□□ -1.54
PTPA-223	ENST00000452489	LCE1A	Q5T7P2	110 aa		5.41	□□□□□ -1.54
PTPA-223	ENST00000452489	MT1A	P04731	61 aa		5.4	□□□□□ -1.54
PTPA-223	ENST00000452489	LCE3E	Q5T5B0	92 aa		5.4	□□□□□ -1.54
PTPA-223	ENST00000452489	KRTAP2-2	Q9BYT5	123 aa		5.38	□□□□□ -1.55
PTPA-223	ENST00000452489	KRTAP19-3	Q7Z4W3	81 aa		5.33	□□□□□ -1.56
PTPA-223	ENST00000452489	KRTAP19-6	Q3LI70	58 aa		5.29	□□□□□ -1.56
PTPA-223	ENST00000452489	MACF1	Q9UPN3	7388 aa	Known RBP	5.21	□□□□□ -1.58
PTPA-223	ENST00000452489	KRTAP6-1	Q3LI64	71 aa		5.21	□□□□□ -1.58
PTPA-223	ENST00000452489	KRTAP6-2	Q3LI66	62 aa		5.19	□□□□□ -1.58
PTPA-223	ENST00000452489	SYNE2	Q8WXH0	6885 aa	Known RBP	5.17	□□□□□ -1.58
PTPA-223	ENST00000452489	LCE1E	Q5T753	118 aa		5.05	□□□□□ -1.6
PTPA-223	ENST00000452489	OBSCN	Q5VST9	7968 aa		5.03	□□□□□ -1.6
PTPA-223	ENST00000452489	LCE5A	Q5TCM9	118 aa		5.03	□□□□□ -1.6
PTPA-223	ENST00000452489	SPRR2F	Q96RM1	72 aa		4.94	□□□□□ -1.62
PTPA-223	ENST00000452489	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.91	□□□□□ -1.62
PTPA-223	ENST00000452489	MDN1	Q9NU22	5596 aa		4.86	□□□□□ -1.63
PTPA-223	ENST00000452489	LCE1D	Q5T752	114 aa		4.86	□□□□□ -1.63
PTPA-223	ENST00000452489	KRTAP9-4	Q9BYQ2	154 aa		4.64	□□□□□ -1.67
PTPA-223	ENST00000452489	KRTAP5-9	P26371	169 aa		4.63	□□□□□ -1.67
PTPA-223	ENST00000452489	SPRR2E	P22531	72 aa		4.53	□□□□□ -1.68
PTPA-223	ENST00000452489	SPRR2B	P35325	72 aa		4.53	□□□□□ -1.68
PTPA-223	ENST00000452489	SPRR2A	P35326	72 aa		4.53	□□□□□ -1.68
PTPA-223	ENST00000452489	NEB	P20929	6669 aa		4.53	□□□□□ -1.68
PTPA-223	ENST00000452489	MT3	P25713	68 aa		4.42	□□□□□ -1.7
PTPA-223	ENST00000452489	SPRR2D	P22532	72 aa		4.35	□□□□□ -1.71
PTPA-223	ENST00000452489	KRTAP4-11	Q9BYQ6	195 aa		4.22	□□□□□ -1.73
PTPA-223	ENST00000452489	KRTAP20-1	Q3LI63	56 aa		4.13	□□□□□ -1.75
PTPA-223	ENST00000452489	LCE1F	Q5T754	118 aa		4.13	□□□□□ -1.75
PTPA-223	ENST00000452489	MUC5AC	P98088	5654 aa		3.99	□□□□□ -1.77
PTPA-223	ENST00000452489	MT4	P47944	62 aa		3.89	□□□□□ -1.79
PTPA-223	ENST00000452489	KRTAP5-10	Q6L8G5	202 aa		3.87	□□□□□ -1.79
PTPA-223	ENST00000452489	KRTAP5-4	Q6L8H1	288 aa		3.86	□□□□□ -1.79
PTPA-223	ENST00000452489	KRTAP4-6	Q9BYQ5	205 aa		3.86	□□□□□ -1.79
PTPA-223	ENST00000452489	HMCN1	Q96RW7	5635 aa		3.85	□□□□□ -1.79
PTPA-223	ENST00000452489	MUC19	Q7Z5P9	8384 aa		3.75	□□□□□ -1.81
PTPA-223	ENST00000452489	LCE4A	Q5TA78	99 aa		3.73	□□□□□ -1.81
PTPA-223	ENST00000452489	KRTAP20-2	Q3LI61	65 aa		3.67	□□□□□ -1.82
PTPA-223	ENST00000452489	KRTAP5-1	Q6L8H4	278 aa		3.63	□□□□□ -1.83
PTPA-223	ENST00000452489	LCE1B	Q5T7P3	118 aa		3.61	□□□□□ -1.83
PTPA-223	ENST00000452489	KRTAP5-2	Q701N4	177 aa		3.57	□□□□□ -1.84
PTPA-223	ENST00000452489	KRTAP21-1	Q3LI58	79 aa		3.56	□□□□□ -1.84
PTPA-223	ENST00000452489	KRTAP5-3	Q6L8H2	238 aa		3.52	□□□□□ -1.85
PTPA-223	ENST00000452489	AHNAK2	Q8IVF2	5795 aa		3.47	□□□□□ -1.85
PTPA-223	ENST00000452489	GPR98	Q8WXG9	6306 aa		3.43	□□□□□ -1.86
PTPA-223	ENST00000452489	LCE1C	Q5T751	118 aa		3.42	□□□□□ -1.86
PTPA-223	ENST00000452489	KRTAP21-2	Q3LI59	83 aa		3.29	□□□□□ -1.88
PTPA-223	ENST00000452489	KRTAP4-2	Q9BYR5	136 aa		3.28	□□□□□ -1.88
PTPA-223	ENST00000452489	KRTAP4-4	Q9BYR3	166 aa		3.19	□□□□□ -1.9
PTPA-223	ENST00000452489	KRTAP5-8	O75690	187 aa		3.07	□□□□□ -1.92
PTPA-223	ENST00000452489	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.02	□□□□□ -1.93
PTPA-223	ENST00000452489	KRTAP5-7	Q6L8G8	165 aa		2.99	□□□□□ -1.93
PTPA-223	ENST00000452489	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.94	□□□□□ -1.94
PTPA-223	ENST00000452489	KRTAP9-9	Q9BYP9	154 aa		2.76	□□□□□ -1.97
PTPA-223	ENST00000452489	AHNAK	Q09666	5890 aa	Known RBP	2.69	□□□□□ -1.98
PTPA-223	ENST00000452489	KRTAP5-11	Q6L8G4	156 aa		2.64	□□□□□ -1.99
PTPA-223	ENST00000452489	KRTAP4-12	Q9BQ66	201 aa		2.62	□□□□□ -1.99
PTPA-223	ENST00000452489	PHGR1	C9JFL3	82 aa		2.32	□□□□□ -2.04
PTPA-223	ENST00000452489	MUC16	Q8WXI7	14507 aa		1.76	□□□□□ -2.13

Retrieved 77 of 20,778 RNA–protein pairs in 141.6 ms