RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 A0A0D9SG42 100 aa5□□□□□ -1.61
CHD3-206ENST00000452447 LCE3BQ5TA77 95 aa4.98□□□□□ -1.61
CHD3-206ENST00000452447 KRTAP23-1A1A580 65 aa4.95□□□□□ -1.62
CHD3-206ENST00000452447 SPINT4Q6UDR6 99 aa4.95□□□□□ -1.62
CHD3-206ENST00000452447 DSTQ03001 7570 aaKnown RBP4.91□□□□□ -1.62
CHD3-206ENST00000452447 KRTAP12-1P59990 96 aa4.9□□□□□ -1.63
CHD3-206ENST00000452447 KRTAP15-1Q3LI76 137 aa4.9□□□□□ -1.63
CHD3-206ENST00000452447 A0A0A0MQY5 61 aa4.87□□□□□ -1.63
CHD3-206ENST00000452447 LOC100996750A0A140TA64 210 aa4.84□□□□□ -1.63
CHD3-206ENST00000452447 KRTAP4-6Q9BYQ5 205 aa4.84□□□□□ -1.63
CHD3-206ENST00000452447 NDUFAF8A1L188 74 aa4.83□□□□□ -1.64
CHD3-206ENST00000452447 KRTAP19-7Q3SYF9 63 aa4.82□□□□□ -1.64
CHD3-206ENST00000452447 MT1EP04732 61 aa4.8□□□□□ -1.64
CHD3-206ENST00000452447 LCE5AQ5TCM9 118 aa4.8□□□□□ -1.64
CHD3-206ENST00000452447 KRTAP19-4Q3LI73 84 aa4.78□□□□□ -1.64
CHD3-206ENST00000452447 KRTAP19-3Q7Z4W3 81 aa4.78□□□□□ -1.64
CHD3-206ENST00000452447 KRTAP19-5Q3LI72 72 aa4.7□□□□□ -1.66
CHD3-206ENST00000452447 GPR98Q8WXG9 6306 aa4.69□□□□□ -1.66
CHD3-206ENST00000452447 MT1GP13640 62 aa4.67□□□□□ -1.66
CHD3-206ENST00000452447 LUZP6Q538Z0 58 aa4.67□□□□□ -1.66
CHD3-206ENST00000452447 PP632Q6XCG6 107 aa4.66□□□□□ -1.66
CHD3-206ENST00000452447 TNP1P09430 55 aa4.65□□□□□ -1.66
CHD3-206ENST00000452447 KRTAP4-9Q9BYQ8 210 aa4.64□□□□□ -1.67
CHD3-206ENST00000452447 C10orf95Q9H7T3 257 aa4.61□□□□□ -1.67
CHD3-206ENST00000452447 MT1MQ8N339 61 aa4.57□□□□□ -1.68
CHD3-206ENST00000452447 MT1LQ93083 61 aa4.57□□□□□ -1.68
CHD3-206ENST00000452447 LCE3AQ5TA76 89 aa4.57□□□□□ -1.68
CHD3-206ENST00000452447 HMCN1Q96RW7 5635 aa4.53□□□□□ -1.68
CHD3-206ENST00000452447 LCE1DQ5T752 114 aa4.52□□□□□ -1.69
CHD3-206ENST00000452447 LCE4AQ5TA78 99 aa4.51□□□□□ -1.69
CHD3-206ENST00000452447 MT4P47944 62 aa4.48□□□□□ -1.69
CHD3-206ENST00000452447 KRTAP4-3Q9BYR4 195 aa4.47□□□□□ -1.69
CHD3-206ENST00000452447 AHNAK2Q8IVF2 5795 aa4.45□□□□□ -1.7
CHD3-206ENST00000452447 KRTAP12-3P60328 96 aa4.4□□□□□ -1.7
CHD3-206ENST00000452447 KRTAP5-4Q6L8H1 288 aa4.38□□□□□ -1.71
CHD3-206ENST00000452447 KRTAP4-12Q9BQ66 201 aa4.37□□□□□ -1.71
CHD3-206ENST00000452447 KRTAP4-7Q9BYR0 210 aa4.35□□□□□ -1.71
CHD3-206ENST00000452447 KRTAP5-10Q6L8G5 202 aa4.22□□□□□ -1.73
CHD3-206ENST00000452447 SPRR5A0A1B0GTR4 108 aa4.2□□□□□ -1.74
CHD3-206ENST00000452447 KRTAP5-5Q701N2 237 aaPredicted RBP4.19□□□□□ -1.74
CHD3-206ENST00000452447 KRTAP9-4Q9BYQ2 154 aa4.19□□□□□ -1.74
CHD3-206ENST00000452447 SYNE1Q8NF91 8797 aaKnown RBP4.17□□□□□ -1.74
CHD3-206ENST00000452447 KRTAP20-2Q3LI61 65 aa4.15□□□□□ -1.74
CHD3-206ENST00000452447 KRTAP9-9Q9BYP9 154 aa4.15□□□□□ -1.74
CHD3-206ENST00000452447 KRTAP12-4P60329 112 aa4.14□□□□□ -1.75
CHD3-206ENST00000452447 INE1O15225 51 aa4.14□□□□□ -1.75
CHD3-206ENST00000452447 KRTAP5-3Q6L8H2 238 aa4.12□□□□□ -1.75
CHD3-206ENST00000452447 KRTAP5-7Q6L8G8 165 aa4.06□□□□□ -1.76
CHD3-206ENST00000452447 LCE3CQ5T5A8 94 aa4.05□□□□□ -1.76
CHD3-206ENST00000452447 MT1AP04731 61 aa3.89□□□□□ -1.79
CHD3-206ENST00000452447 KRTAP6-1Q3LI64 71 aa3.87□□□□□ -1.79
CHD3-206ENST00000452447 KRTAP5-2Q701N4 177 aa3.83□□□□□ -1.8
CHD3-206ENST00000452447 KRTAP4-11Q9BYQ6 195 aa3.82□□□□□ -1.8
CHD3-206ENST00000452447 KRTAP9-6A8MVA2 160 aa3.79□□□□□ -1.8
CHD3-206ENST00000452447 KRTAP4-2Q9BYR5 136 aa3.77□□□□□ -1.81
CHD3-206ENST00000452447 OBSCNQ5VST9 7968 aa3.75□□□□□ -1.81
CHD3-206ENST00000452447 KRTAP6-2Q3LI66 62 aa3.72□□□□□ -1.81
CHD3-206ENST00000452447 AHNAKQ09666 5890 aaKnown RBP3.71□□□□□ -1.82
CHD3-206ENST00000452447 KRTAP5-8O75690 187 aa3.68□□□□□ -1.82
CHD3-206ENST00000452447 MUC5BQ9HC84 5762 aaPredicted RBP3.66□□□□□ -1.82
CHD3-206ENST00000452447 MUC5ACP98088 5654 aa3.62□□□□□ -1.83
CHD3-206ENST00000452447 MT3P25713 68 aa3.59□□□□□ -1.84
CHD3-206ENST00000452447 KRTAP5-1Q6L8H4 278 aa3.45□□□□□ -1.86
CHD3-206ENST00000452447 LCE1EQ5T753 118 aa3.29□□□□□ -1.88
CHD3-206ENST00000452447 LCE1BQ5T7P3 118 aa3.12□□□□□ -1.91
CHD3-206ENST00000452447 LCE1FQ5T754 118 aa3.12□□□□□ -1.91
CHD3-206ENST00000452447 LCE1CQ5T751 118 aa3.06□□□□□ -1.92
CHD3-206ENST00000452447 LCE3DQ9BYE3 92 aa2.96□□□□□ -1.94
CHD3-206ENST00000452447 LCE3EQ5T5B0 92 aa2.87□□□□□ -1.95
CHD3-206ENST00000452447 KRTAP5-11Q6L8G4 156 aa2.77□□□□□ -1.97
CHD3-206ENST00000452447 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.76□□□□□ -1.97
CHD3-206ENST00000452447 PRM1P04553 51 aa2.61□□□□□ -1.99
CHD3-206ENST00000452447 KRTAP21-2Q3LI59 83 aa2.55□□□□□ -2
CHD3-206ENST00000452447 PHGR1C9JFL3 82 aa2.49□□□□□ -2.01
CHD3-206ENST00000452447 KRTAP4-4Q9BYR3 166 aa2.36□□□□□ -2.03
CHD3-206ENST00000452447 MUC19Q7Z5P9 8384 aa2.34□□□□□ -2.04
CHD3-206ENST00000452447 KRTAP21-1Q3LI58 79 aa1.89□□□□□ -2.11
CHD3-206ENST00000452447 MUC16Q8WXI7 14507 aa1.63□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 114.4 ms