RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 LCE3AQ5TA76 89 aa7.32□□□□□ -1.24
COL9A3-202ENST00000452372 A6NED7 52 aa7.31□□□□□ -1.24
COL9A3-202ENST00000452372 LCE5AQ5TCM9 118 aa7.28□□□□□ -1.24
COL9A3-202ENST00000452372 KRTAP19-3Q7Z4W3 81 aa7.28□□□□□ -1.24
COL9A3-202ENST00000452372 KRTAP25-1Q3LHN0 102 aa7.18□□□□□ -1.26
COL9A3-202ENST00000452372 MT1GP13640 62 aa7.15□□□□□ -1.26
COL9A3-202ENST00000452372 KRTAP4-9Q9BYQ8 210 aa7.14□□□□□ -1.27
COL9A3-202ENST00000452372 MT1LQ93083 61 aa7.11□□□□□ -1.27
COL9A3-202ENST00000452372 PP632Q6XCG6 107 aa7.08□□□□□ -1.28
COL9A3-202ENST00000452372 KRTAP12-3P60328 96 aa7.05□□□□□ -1.28
COL9A3-202ENST00000452372 CDC42SE1Q9NRR8 79 aa7.03□□□□□ -1.28
COL9A3-202ENST00000452372 MT1MQ8N339 61 aa7.02□□□□□ -1.29
COL9A3-202ENST00000452372 KRTAP23-1A1A580 65 aa6.95□□□□□ -1.3
COL9A3-202ENST00000452372 LCE1DQ5T752 114 aa6.94□□□□□ -1.3
COL9A3-202ENST00000452372 ROMO1P60602 79 aa6.91□□□□□ -1.3
COL9A3-202ENST00000452372 HMCN1Q96RW7 5635 aa6.88□□□□□ -1.31
COL9A3-202ENST00000452372 LCE4AQ5TA78 99 aa6.84□□□□□ -1.31
COL9A3-202ENST00000452372 KRTAP4-3Q9BYR4 195 aa6.83□□□□□ -1.32
COL9A3-202ENST00000452372 MT4P47944 62 aa6.8□□□□□ -1.32
COL9A3-202ENST00000452372 KRTAP4-7Q9BYR0 210 aa6.77□□□□□ -1.33
COL9A3-202ENST00000452372 AHNAK2Q8IVF2 5795 aa6.76□□□□□ -1.33
COL9A3-202ENST00000452372 KRTAP5-4Q6L8H1 288 aa6.74□□□□□ -1.33
COL9A3-202ENST00000452372 KRTAP19-4Q3LI73 84 aa6.71□□□□□ -1.34
COL9A3-202ENST00000452372 KRTAP15-1Q3LI76 137 aa6.68□□□□□ -1.34
COL9A3-202ENST00000452372 KRTAP4-6Q9BYQ5 205 aa6.66□□□□□ -1.34
COL9A3-202ENST00000452372 KRTAP5-10Q6L8G5 202 aa6.58□□□□□ -1.36
COL9A3-202ENST00000452372 BRK1Q8WUW1 75 aa6.55□□□□□ -1.36
COL9A3-202ENST00000452372 LCE3CQ5T5A8 94 aa6.53□□□□□ -1.36
COL9A3-202ENST00000452372 KRTAP5-5Q701N2 237 aaPredicted RBP6.42□□□□□ -1.38
COL9A3-202ENST00000452372 LOC100996750A0A140TA64 210 aa6.4□□□□□ -1.38
COL9A3-202ENST00000452372 KRTAP5-3Q6L8H2 238 aa6.37□□□□□ -1.39
COL9A3-202ENST00000452372 KRTAP20-2Q3LI61 65 aa6.35□□□□□ -1.39
COL9A3-202ENST00000452372 KRTAP5-7Q6L8G8 165 aa6.34□□□□□ -1.39
COL9A3-202ENST00000452372 SPRR5A0A1B0GTR4 108 aa6.28□□□□□ -1.4
COL9A3-202ENST00000452372 SYNE1Q8NF91 8797 aaKnown RBP6.2□□□□□ -1.42
COL9A3-202ENST00000452372 PMAIP1Q13794 54 aa6.19□□□□□ -1.42
COL9A3-202ENST00000452372 KRTAP12-4P60329 112 aa6.18□□□□□ -1.42
COL9A3-202ENST00000452372 KRTAP9-6A8MVA2 160 aa6.15□□□□□ -1.42
COL9A3-202ENST00000452372 MT1AP04731 61 aa6.06□□□□□ -1.44
COL9A3-202ENST00000452372 KRTAP6-1Q3LI64 71 aa6□□□□□ -1.45
COL9A3-202ENST00000452372 PRO0628Q9UI54 55 aa5.94□□□□□ -1.46
COL9A3-202ENST00000452372 PRAC1Q96KF2 57 aa5.88□□□□□ -1.47
COL9A3-202ENST00000452372 KRTAP5-2Q701N4 177 aa5.87□□□□□ -1.47
COL9A3-202ENST00000452372 KRTAP4-11Q9BYQ6 195 aa5.85□□□□□ -1.47
COL9A3-202ENST00000452372 KRTAP9-4Q9BYQ2 154 aa5.84□□□□□ -1.47
COL9A3-202ENST00000452372 KRTAP5-8O75690 187 aa5.68□□□□□ -1.5
COL9A3-202ENST00000452372 KRTAP6-2Q3LI66 62 aa5.68□□□□□ -1.5
COL9A3-202ENST00000452372 AHNAKQ09666 5890 aaKnown RBP5.64□□□□□ -1.51
COL9A3-202ENST00000452372 KTN1-AS1Q86SY8 53 aa5.62□□□□□ -1.51
COL9A3-202ENST00000452372 MUC5BQ9HC84 5762 aaPredicted RBP5.58□□□□□ -1.52
COL9A3-202ENST00000452372 OBSCNQ5VST9 7968 aa5.58□□□□□ -1.52
COL9A3-202ENST00000452372 MUC5ACP98088 5654 aa5.56□□□□□ -1.52
COL9A3-202ENST00000452372 MT3P25713 68 aa5.54□□□□□ -1.52
COL9A3-202ENST00000452372 KRTAP9-9Q9BYP9 154 aa5.36□□□□□ -1.55
COL9A3-202ENST00000452372 SVIPQ8NHG7 77 aa5.33□□□□□ -1.56
COL9A3-202ENST00000452372 KRTAP5-1Q6L8H4 278 aa5.32□□□□□ -1.56
COL9A3-202ENST00000452372 LCE1EQ5T753 118 aa5.03□□□□□ -1.6
COL9A3-202ENST00000452372 LUZP6Q538Z0 58 aa4.94□□□□□ -1.62
COL9A3-202ENST00000452372 LCE3DQ9BYE3 92 aa4.76□□□□□ -1.65
COL9A3-202ENST00000452372 KRTAP4-2Q9BYR5 136 aa4.76□□□□□ -1.65
COL9A3-202ENST00000452372 LCE1BQ5T7P3 118 aa4.68□□□□□ -1.66
COL9A3-202ENST00000452372 LCE1CQ5T751 118 aa4.66□□□□□ -1.66
COL9A3-202ENST00000452372 LCE3EQ5T5B0 92 aa4.52□□□□□ -1.69
COL9A3-202ENST00000452372 KRTAP4-12Q9BQ66 201 aa4.38□□□□□ -1.71
COL9A3-202ENST00000452372 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.29□□□□□ -1.72
COL9A3-202ENST00000452372 KRTAP5-11Q6L8G4 156 aa4.19□□□□□ -1.74
COL9A3-202ENST00000452372 NDUFAF8A1L188 74 aa4.18□□□□□ -1.74
COL9A3-202ENST00000452372 LCE1FQ5T754 118 aa4.12□□□□□ -1.75
COL9A3-202ENST00000452372 KRTAP21-2Q3LI59 83 aa3.97□□□□□ -1.77
COL9A3-202ENST00000452372 PHGR1C9JFL3 82 aa3.81□□□□□ -1.8
COL9A3-202ENST00000452372 KRTAP4-4Q9BYR3 166 aa3.57□□□□□ -1.84
COL9A3-202ENST00000452372 PRM1P04553 51 aa3.53□□□□□ -1.84
COL9A3-202ENST00000452372 MUC19Q7Z5P9 8384 aa3.47□□□□□ -1.85
COL9A3-202ENST00000452372 A0A0A0MQY5 61 aa3.42□□□□□ -1.86
COL9A3-202ENST00000452372 INE1O15225 51 aa3.42□□□□□ -1.86
COL9A3-202ENST00000452372 KRTAP21-1Q3LI58 79 aa2.93□□□□□ -1.94
COL9A3-202ENST00000452372 H3BS24 57 aa2.76□□□□□ -1.97
COL9A3-202ENST00000452372 MUC16Q8WXI7 14507 aa2.42□□□□□ -2.02
Retrieved 78 of 20,778 RNA–protein pairs in 104.6 ms