RNA–Protein interactions for RNA: ENST00000450169.6

LSM5-208, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM5, Length 2,258 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-208ENST00000450169 MT1HP80294 61 aa3.28□□□□□ -1.88
LSM5-208ENST00000450169 M0R2T5 61 aa3.24□□□□□ -1.89
LSM5-208ENST00000450169 KRTAP10-5P60370 271 aa3.24□□□□□ -1.89
LSM5-208ENST00000450169 LCE3EQ5T5B0 92 aa3.21□□□□□ -1.9
LSM5-208ENST00000450169 MT1FP04733 61 aa3.19□□□□□ -1.9
LSM5-208ENST00000450169 MT2AP02795 61 aa3.19□□□□□ -1.9
LSM5-208ENST00000450169 MT1XP80297 61 aa3.17□□□□□ -1.9
LSM5-208ENST00000450169 KRTAP2-3P0C7H8 128 aa3.13□□□□□ -1.91
LSM5-208ENST00000450169 KRTAP19-8Q3LI54 63 aa3.13□□□□□ -1.91
LSM5-208ENST00000450169 KRTAP2-4Q9BYR9 128 aa3.13□□□□□ -1.91
LSM5-208ENST00000450169 KRTAP2-1Q9BYU5 128 aa3.13□□□□□ -1.91
LSM5-208ENST00000450169 KRTAP10-7P60409 375 aaPredicted RBP3.13□□□□□ -1.91
LSM5-208ENST00000450169 KRTAP9-6A8MVA2 160 aa3.09□□□□□ -1.91
LSM5-208ENST00000450169 MT1BP07438 61 aa3.09□□□□□ -1.92
LSM5-208ENST00000450169 USH2AO75445 5202 aa3.08□□□□□ -1.92
LSM5-208ENST00000450169 KRTAP19-5Q3LI72 72 aa3.07□□□□□ -1.92
LSM5-208ENST00000450169 KMT2DO14686 5537 aa2.93□□□□□ -1.94
LSM5-208ENST00000450169 FSIP2Q5CZC0 6907 aa2.9□□□□□ -1.95
LSM5-208ENST00000450169 SSPOA2VEC9 5147 aa2.89□□□□□ -1.95
LSM5-208ENST00000450169 KRTAP12-4P60329 112 aa2.88□□□□□ -1.95
LSM5-208ENST00000450169 HMCN1Q96RW7 5635 aa2.87□□□□□ -1.95
LSM5-208ENST00000450169 LCE3DQ9BYE3 92 aa2.83□□□□□ -1.96
LSM5-208ENST00000450169 KRTAP19-7Q3SYF9 63 aa2.82□□□□□ -1.96
LSM5-208ENST00000450169 LCE1EQ5T753 118 aa2.79□□□□□ -1.96
LSM5-208ENST00000450169 MT1LQ93083 61 aa2.77□□□□□ -1.97
LSM5-208ENST00000450169 MT1EP04732 61 aa2.71□□□□□ -1.98
LSM5-208ENST00000450169 KRTAP19-6Q3LI70 58 aa2.71□□□□□ -1.98
LSM5-208ENST00000450169 FCGBPQ9Y6R7 5405 aaPredicted RBP2.7□□□□□ -1.98
LSM5-208ENST00000450169 MT1GP13640 62 aa2.63□□□□□ -1.99
LSM5-208ENST00000450169 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.63□□□□□ -1.99
LSM5-208ENST00000450169 MUC12Q9UKN1 5478 aa2.63□□□□□ -1.99
LSM5-208ENST00000450169 KRTAP4-3Q9BYR4 195 aa2.61□□□□□ -1.99
LSM5-208ENST00000450169 MACF1Q9UPN3 7388 aaKnown RBP2.6□□□□□ -1.99
LSM5-208ENST00000450169 PRM1P04553 51 aa2.59□□□□□ -1.99
LSM5-208ENST00000450169 CRCT1Q9UGL9 99 aa2.59□□□□□ -1.99
LSM5-208ENST00000450169 KRTAP6-3Q3LI67 103 aa2.57□□□□□ -2
LSM5-208ENST00000450169 KRTAP5-11Q6L8G4 156 aa2.56□□□□□ -2
LSM5-208ENST00000450169 SYNE2Q8WXH0 6885 aaKnown RBP2.55□□□□□ -2
LSM5-208ENST00000450169 MT1AP04731 61 aa2.54□□□□□ -2
LSM5-208ENST00000450169 KRTAP5-5Q701N2 237 aaPredicted RBP2.53□□□□□ -2
LSM5-208ENST00000450169 MT1MQ8N339 61 aa2.51□□□□□ -2.01
LSM5-208ENST00000450169 MDN1Q9NU22 5596 aa2.49□□□□□ -2.01
LSM5-208ENST00000450169 DSTQ03001 7570 aaKnown RBP2.48□□□□□ -2.01
LSM5-208ENST00000450169 KRTAP5-9P26371 169 aa2.47□□□□□ -2.01
LSM5-208ENST00000450169 SPRR2FQ96RM1 72 aa2.45□□□□□ -2.02
LSM5-208ENST00000450169 KRTAP19-3Q7Z4W3 81 aa2.45□□□□□ -2.02
LSM5-208ENST00000450169 SYNE1Q8NF91 8797 aaKnown RBP2.43□□□□□ -2.02
LSM5-208ENST00000450169 KRTAP6-2Q3LI66 62 aa2.39□□□□□ -2.03
LSM5-208ENST00000450169 KRTAP6-1Q3LI64 71 aa2.37□□□□□ -2.03
LSM5-208ENST00000450169 SPRR2EP22531 72 aa2.27□□□□□ -2.05
LSM5-208ENST00000450169 SPRR2BP35325 72 aa2.27□□□□□ -2.05
LSM5-208ENST00000450169 SPRR2AP35326 72 aa2.27□□□□□ -2.05
LSM5-208ENST00000450169 KRTAP5-4Q6L8H1 288 aa2.25□□□□□ -2.05
LSM5-208ENST00000450169 OBSCNQ5VST9 7968 aa2.22□□□□□ -2.05
LSM5-208ENST00000450169 MUC5BQ9HC84 5762 aaPredicted RBP2.2□□□□□ -2.06
LSM5-208ENST00000450169 SPRR2DP22532 72 aa2.17□□□□□ -2.06
LSM5-208ENST00000450169 NEBP20929 6669 aa2.17□□□□□ -2.06
LSM5-208ENST00000450169 KRTAP5-1Q6L8H4 278 aa2.16□□□□□ -2.06
LSM5-208ENST00000450169 KRTAP4-4Q9BYR3 166 aa2.13□□□□□ -2.07
LSM5-208ENST00000450169 KRTAP5-2Q701N4 177 aa2.01□□□□□ -2.09
LSM5-208ENST00000450169 MT4P47944 62 aa1.93□□□□□ -2.1
LSM5-208ENST00000450169 KRTAP5-8O75690 187 aa1.9□□□□□ -2.11
LSM5-208ENST00000450169 LCE1CQ5T751 118 aa1.88□□□□□ -2.11
LSM5-208ENST00000450169 LCE1BQ5T7P3 118 aa1.88□□□□□ -2.11
LSM5-208ENST00000450169 KRTAP20-2Q3LI61 65 aa1.88□□□□□ -2.11
LSM5-208ENST00000450169 KRTAP20-1Q3LI63 56 aa1.84□□□□□ -2.11
LSM5-208ENST00000450169 MUC5ACP98088 5654 aa1.81□□□□□ -2.12
LSM5-208ENST00000450169 GPR98Q8WXG9 6306 aa1.81□□□□□ -2.12
LSM5-208ENST00000450169 KRTAP5-10Q6L8G5 202 aa1.78□□□□□ -2.12
LSM5-208ENST00000450169 KRTAP5-7Q6L8G8 165 aa1.69□□□□□ -2.14
LSM5-208ENST00000450169 KRTAP21-1Q3LI58 79 aa1.67□□□□□ -2.14
LSM5-208ENST00000450169 MUC19Q7Z5P9 8384 aa1.66□□□□□ -2.14
LSM5-208ENST00000450169 AHNAK2Q8IVF2 5795 aa1.62□□□□□ -2.15
LSM5-208ENST00000450169 KRTAP21-2Q3LI59 83 aa1.5□□□□□ -2.17
LSM5-208ENST00000450169 AHNAKQ09666 5890 aaKnown RBP1.47□□□□□ -2.17
LSM5-208ENST00000450169 PHGR1C9JFL3 82 aa1.15□□□□□ -2.22
LSM5-208ENST00000450169 MUC16Q8WXI7 14507 aa0.81□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 149.3 ms