RNA–Protein interactions for RNA: ENST00000431039.1

TTC28-202, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 905 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-202ENST00000431039 KRTAP25-1Q3LHN0 102 aa6.46□□□□□ -1.38
TTC28-202ENST00000431039 GPR98Q8WXG9 6306 aa6.41□□□□□ -1.38
TTC28-202ENST00000431039 PMAIP1Q13794 54 aa6.41□□□□□ -1.38
TTC28-202ENST00000431039 DSTQ03001 7570 aaKnown RBP6.29□□□□□ -1.4
TTC28-202ENST00000431039 KRTAP23-1A1A580 65 aa6.27□□□□□ -1.41
TTC28-202ENST00000431039 LCE3AQ5TA76 89 aa6.26□□□□□ -1.41
TTC28-202ENST00000431039 PP632Q6XCG6 107 aa6.17□□□□□ -1.42
TTC28-202ENST00000431039 KRTAP4-9Q9BYQ8 210 aa6.15□□□□□ -1.42
TTC28-202ENST00000431039 KRTAP19-7Q3SYF9 63 aa6.12□□□□□ -1.43
TTC28-202ENST00000431039 KRTAP19-5Q3LI72 72 aa6.11□□□□□ -1.43
TTC28-202ENST00000431039 LCE5AQ5TCM9 118 aa6.08□□□□□ -1.44
TTC28-202ENST00000431039 KTN1-AS1Q86SY8 53 aa6.05□□□□□ -1.44
TTC28-202ENST00000431039 KRTAP12-3P60328 96 aa6.04□□□□□ -1.44
TTC28-202ENST00000431039 MT1EP04732 61 aa6.03□□□□□ -1.44
TTC28-202ENST00000431039 KRTAP19-3Q7Z4W3 81 aa6.03□□□□□ -1.44
TTC28-202ENST00000431039 PRAC1Q96KF2 57 aa6.01□□□□□ -1.45
TTC28-202ENST00000431039 LCE1DQ5T752 114 aa5.95□□□□□ -1.46
TTC28-202ENST00000431039 HMCN1Q96RW7 5635 aa5.95□□□□□ -1.46
TTC28-202ENST00000431039 AHNAK2Q8IVF2 5795 aa5.89□□□□□ -1.47
TTC28-202ENST00000431039 MT4P47944 62 aa5.86□□□□□ -1.47
TTC28-202ENST00000431039 KRTAP15-1Q3LI76 137 aa5.86□□□□□ -1.47
TTC28-202ENST00000431039 MT1LQ93083 61 aa5.86□□□□□ -1.47
TTC28-202ENST00000431039 MT1GP13640 62 aa5.83□□□□□ -1.48
TTC28-202ENST00000431039 LCE4AQ5TA78 99 aa5.81□□□□□ -1.48
TTC28-202ENST00000431039 KRTAP19-4Q3LI73 84 aa5.78□□□□□ -1.48
TTC28-202ENST00000431039 MT1MQ8N339 61 aa5.76□□□□□ -1.49
TTC28-202ENST00000431039 SVIPQ8NHG7 77 aa5.68□□□□□ -1.5
TTC28-202ENST00000431039 KRTAP4-3Q9BYR4 195 aa5.68□□□□□ -1.5
TTC28-202ENST00000431039 KRTAP5-10Q6L8G5 202 aa5.67□□□□□ -1.5
TTC28-202ENST00000431039 KRTAP5-4Q6L8H1 288 aa5.65□□□□□ -1.5
TTC28-202ENST00000431039 KRTAP4-6Q9BYQ5 205 aa5.64□□□□□ -1.51
TTC28-202ENST00000431039 LCE3CQ5T5A8 94 aa5.63□□□□□ -1.51
TTC28-202ENST00000431039 KRTAP4-7Q9BYR0 210 aa5.59□□□□□ -1.51
TTC28-202ENST00000431039 KRTAP5-7Q6L8G8 165 aa5.48□□□□□ -1.53
TTC28-202ENST00000431039 KRTAP5-3Q6L8H2 238 aa5.47□□□□□ -1.53
TTC28-202ENST00000431039 KRTAP20-2Q3LI61 65 aa5.38□□□□□ -1.55
TTC28-202ENST00000431039 SPRR5A0A1B0GTR4 108 aa5.34□□□□□ -1.55
TTC28-202ENST00000431039 KRTAP5-5Q701N2 237 aaPredicted RBP5.29□□□□□ -1.56
TTC28-202ENST00000431039 KRTAP9-6A8MVA2 160 aa5.28□□□□□ -1.56
TTC28-202ENST00000431039 SYNE1Q8NF91 8797 aaKnown RBP5.27□□□□□ -1.57
TTC28-202ENST00000431039 LOC100996750A0A140TA64 210 aa5.26□□□□□ -1.57
TTC28-202ENST00000431039 KRTAP12-4P60329 112 aa5.23□□□□□ -1.57
TTC28-202ENST00000431039 MT1AP04731 61 aa5□□□□□ -1.61
TTC28-202ENST00000431039 LUZP6Q538Z0 58 aa4.99□□□□□ -1.61
TTC28-202ENST00000431039 KRTAP4-11Q9BYQ6 195 aa4.98□□□□□ -1.61
TTC28-202ENST00000431039 AHNAKQ09666 5890 aaKnown RBP4.95□□□□□ -1.62
TTC28-202ENST00000431039 KRTAP6-1Q3LI64 71 aa4.92□□□□□ -1.62
TTC28-202ENST00000431039 KRTAP5-2Q701N4 177 aa4.89□□□□□ -1.63
TTC28-202ENST00000431039 MUC5BQ9HC84 5762 aaPredicted RBP4.87□□□□□ -1.63
TTC28-202ENST00000431039 MUC5ACP98088 5654 aa4.86□□□□□ -1.63
TTC28-202ENST00000431039 KRTAP5-8O75690 187 aa4.82□□□□□ -1.64
TTC28-202ENST00000431039 KRTAP9-4Q9BYQ2 154 aa4.78□□□□□ -1.64
TTC28-202ENST00000431039 OBSCNQ5VST9 7968 aa4.76□□□□□ -1.65
TTC28-202ENST00000431039 KRTAP6-2Q3LI66 62 aa4.7□□□□□ -1.66
TTC28-202ENST00000431039 KRTAP9-9Q9BYP9 154 aa4.63□□□□□ -1.67
TTC28-202ENST00000431039 NDUFAF8A1L188 74 aa4.62□□□□□ -1.67
TTC28-202ENST00000431039 MT3P25713 68 aa4.56□□□□□ -1.68
TTC28-202ENST00000431039 KRTAP5-1Q6L8H4 278 aa4.45□□□□□ -1.7
TTC28-202ENST00000431039 LCE3DQ9BYE3 92 aa4.18□□□□□ -1.74
TTC28-202ENST00000431039 LCE1EQ5T753 118 aa4.11□□□□□ -1.75
TTC28-202ENST00000431039 LCE3EQ5T5B0 92 aa4.04□□□□□ -1.76
TTC28-202ENST00000431039 A0A0A0MQY5 61 aa4□□□□□ -1.77
TTC28-202ENST00000431039 LCE1BQ5T7P3 118 aa3.98□□□□□ -1.77
TTC28-202ENST00000431039 KRTAP4-2Q9BYR5 136 aa3.96□□□□□ -1.78
TTC28-202ENST00000431039 INE1O15225 51 aa3.85□□□□□ -1.79
TTC28-202ENST00000431039 H3BS24 57 aa3.84□□□□□ -1.79
TTC28-202ENST00000431039 LCE1CQ5T751 118 aa3.82□□□□□ -1.8
TTC28-202ENST00000431039 KRTAP4-12Q9BQ66 201 aa3.75□□□□□ -1.81
TTC28-202ENST00000431039 KRTAP5-11Q6L8G4 156 aa3.5□□□□□ -1.85
TTC28-202ENST00000431039 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.49□□□□□ -1.85
TTC28-202ENST00000431039 LCE1FQ5T754 118 aa3.46□□□□□ -1.86
TTC28-202ENST00000431039 PRM1P04553 51 aa3.35□□□□□ -1.87
TTC28-202ENST00000431039 PHGR1C9JFL3 82 aa3.34□□□□□ -1.87
TTC28-202ENST00000431039 KRTAP21-2Q3LI59 83 aa3.24□□□□□ -1.89
TTC28-202ENST00000431039 KRTAP4-4Q9BYR3 166 aa3.02□□□□□ -1.93
TTC28-202ENST00000431039 MUC19Q7Z5P9 8384 aa2.98□□□□□ -1.93
TTC28-202ENST00000431039 KRTAP21-1Q3LI58 79 aa2.51□□□□□ -2.01
TTC28-202ENST00000431039 MUC16Q8WXI7 14507 aa2.1□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 145 ms