RNA–Protein interactions for RNA: ENST00000425836.6

VEGFA-209, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,575 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-209ENST00000425836 KRTAP20-1Q3LI63 56 aa8.92□□□□□ -0.98
VEGFA-209ENST00000425836 ROMO1P60602 79 aa8.9□□□□□ -0.98
VEGFA-209ENST00000425836 KRTAP19-3Q7Z4W3 81 aa8.88□□□□□ -0.99
VEGFA-209ENST00000425836 KRTAP2-3P0C7H8 128 aa8.84□□□□□ -0.99
VEGFA-209ENST00000425836 KRTAP2-4Q9BYR9 128 aa8.84□□□□□ -0.99
VEGFA-209ENST00000425836 LCE5AQ5TCM9 118 aa8.83□□□□□ -1
VEGFA-209ENST00000425836 KRTAP12-3P60328 96 aa8.77□□□□□ -1.01
VEGFA-209ENST00000425836 MT1LQ93083 61 aa8.75□□□□□ -1.01
VEGFA-209ENST00000425836 KRTAP23-1A1A580 65 aa8.74□□□□□ -1.01
VEGFA-209ENST00000425836 MT1GP13640 62 aa8.72□□□□□ -1.01
VEGFA-209ENST00000425836 LCE3BQ5TA77 95 aa8.64□□□□□ -1.03
VEGFA-209ENST00000425836 PP632Q6XCG6 107 aa8.62□□□□□ -1.03
VEGFA-209ENST00000425836 KRTAP2-2Q9BYT5 123 aa8.6□□□□□ -1.03
VEGFA-209ENST00000425836 KRTAP2-1Q9BYU5 128 aa8.6□□□□□ -1.03
VEGFA-209ENST00000425836 MT1MQ8N339 61 aa8.58□□□□□ -1.04
VEGFA-209ENST00000425836 PRAC1Q96KF2 57 aa8.44□□□□□ -1.06
VEGFA-209ENST00000425836 DSTQ03001 7570 aaKnown RBP8.44□□□□□ -1.06
VEGFA-209ENST00000425836 KRTAP4-3Q9BYR4 195 aa8.39□□□□□ -1.07
VEGFA-209ENST00000425836 KRTAP4-7Q9BYR0 210 aa8.38□□□□□ -1.07
VEGFA-209ENST00000425836 KRTAP15-1Q3LI76 137 aa8.37□□□□□ -1.07
VEGFA-209ENST00000425836 KRTAP19-4Q3LI73 84 aa8.28□□□□□ -1.08
VEGFA-209ENST00000425836 H3BS24 57 aa8.26□□□□□ -1.09
VEGFA-209ENST00000425836 LCE3CQ5T5A8 94 aa8.14□□□□□ -1.11
VEGFA-209ENST00000425836 LCE4AQ5TA78 99 aa7.92□□□□□ -1.14
VEGFA-209ENST00000425836 KRTAP4-9Q9BYQ8 210 aa7.92□□□□□ -1.14
VEGFA-209ENST00000425836 LOC100996750A0A140TA64 210 aa7.9□□□□□ -1.14
VEGFA-209ENST00000425836 KRTAP5-4Q6L8H1 288 aa7.88□□□□□ -1.15
VEGFA-209ENST00000425836 KRTAP5-5Q701N2 237 aaPredicted RBP7.84□□□□□ -1.15
VEGFA-209ENST00000425836 LCE1DQ5T752 114 aa7.79□□□□□ -1.16
VEGFA-209ENST00000425836 MT4P47944 62 aa7.77□□□□□ -1.17
VEGFA-209ENST00000425836 KRTAP9-6A8MVA2 160 aa7.69□□□□□ -1.18
VEGFA-209ENST00000425836 KRTAP4-6Q9BYQ5 205 aa7.63□□□□□ -1.19
VEGFA-209ENST00000425836 HMCN1Q96RW7 5635 aa7.63□□□□□ -1.19
VEGFA-209ENST00000425836 KRTAP12-4P60329 112 aa7.48□□□□□ -1.21
VEGFA-209ENST00000425836 MT1AP04731 61 aa7.44□□□□□ -1.22
VEGFA-209ENST00000425836 SYNE1Q8NF91 8797 aaKnown RBP7.43□□□□□ -1.22
VEGFA-209ENST00000425836 SPRR5A0A1B0GTR4 108 aa7.42□□□□□ -1.22
VEGFA-209ENST00000425836 KRTAP20-2Q3LI61 65 aa7.41□□□□□ -1.22
VEGFA-209ENST00000425836 KRTAP6-1Q3LI64 71 aa7.38□□□□□ -1.23
VEGFA-209ENST00000425836 NDUFAF8A1L188 74 aa7.31□□□□□ -1.24
VEGFA-209ENST00000425836 KRTAP5-3Q6L8H2 238 aa7.18□□□□□ -1.26
VEGFA-209ENST00000425836 GPR98Q8WXG9 6306 aa7.18□□□□□ -1.26
VEGFA-209ENST00000425836 AHNAK2Q8IVF2 5795 aa7.17□□□□□ -1.26
VEGFA-209ENST00000425836 KRTAP9-4Q9BYQ2 154 aa7.16□□□□□ -1.26
VEGFA-209ENST00000425836 KRTAP5-2Q701N4 177 aa7□□□□□ -1.29
VEGFA-209ENST00000425836 A0A0A0MQY5 61 aa6.99□□□□□ -1.29
VEGFA-209ENST00000425836 KRTAP5-10Q6L8G5 202 aa6.97□□□□□ -1.29
VEGFA-209ENST00000425836 KRTAP6-2Q3LI66 62 aa6.95□□□□□ -1.3
VEGFA-209ENST00000425836 LUZP6Q538Z0 58 aa6.88□□□□□ -1.31
VEGFA-209ENST00000425836 MT3P25713 68 aa6.78□□□□□ -1.32
VEGFA-209ENST00000425836 KRTAP4-11Q9BYQ6 195 aa6.64□□□□□ -1.35
VEGFA-209ENST00000425836 KRTAP5-7Q6L8G8 165 aa6.62□□□□□ -1.35
VEGFA-209ENST00000425836 OBSCNQ5VST9 7968 aa6.42□□□□□ -1.38
VEGFA-209ENST00000425836 KRTAP5-8O75690 187 aa6.4□□□□□ -1.38
VEGFA-209ENST00000425836 KRTAP5-1Q6L8H4 278 aa6.19□□□□□ -1.42
VEGFA-209ENST00000425836 INE1O15225 51 aa6.15□□□□□ -1.42
VEGFA-209ENST00000425836 LCE1EQ5T753 118 aa6.1□□□□□ -1.43
VEGFA-209ENST00000425836 KRTAP4-12Q9BQ66 201 aa6.05□□□□□ -1.44
VEGFA-209ENST00000425836 MUC5ACP98088 5654 aa6.02□□□□□ -1.45
VEGFA-209ENST00000425836 LCE3DQ9BYE3 92 aa5.97□□□□□ -1.45
VEGFA-209ENST00000425836 KRTAP9-9Q9BYP9 154 aa5.96□□□□□ -1.46
VEGFA-209ENST00000425836 MUC5BQ9HC84 5762 aaPredicted RBP5.81□□□□□ -1.48
VEGFA-209ENST00000425836 AHNAKQ09666 5890 aaKnown RBP5.74□□□□□ -1.49
VEGFA-209ENST00000425836 KRTAP4-2Q9BYR5 136 aa5.74□□□□□ -1.49
VEGFA-209ENST00000425836 LCE1BQ5T7P3 118 aa5.72□□□□□ -1.49
VEGFA-209ENST00000425836 LCE3EQ5T5B0 92 aa5.7□□□□□ -1.5
VEGFA-209ENST00000425836 LCE1CQ5T751 118 aa5.67□□□□□ -1.5
VEGFA-209ENST00000425836 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.22□□□□□ -1.57
VEGFA-209ENST00000425836 KRTAP5-11Q6L8G4 156 aa5.08□□□□□ -1.6
VEGFA-209ENST00000425836 KRTAP21-2Q3LI59 83 aa4.86□□□□□ -1.63
VEGFA-209ENST00000425836 LCE1FQ5T754 118 aa4.81□□□□□ -1.64
VEGFA-209ENST00000425836 PRM1P04553 51 aa4.61□□□□□ -1.67
VEGFA-209ENST00000425836 PHGR1C9JFL3 82 aa4.38□□□□□ -1.71
VEGFA-209ENST00000425836 KRTAP4-4Q9BYR3 166 aa4.38□□□□□ -1.71
VEGFA-209ENST00000425836 MUC19Q7Z5P9 8384 aa3.93□□□□□ -1.78
VEGFA-209ENST00000425836 KRTAP21-1Q3LI58 79 aa3.04□□□□□ -1.92
VEGFA-209ENST00000425836 MUC16Q8WXI7 14507 aa2.79□□□□□ -1.96
Retrieved 77 of 20,778 RNA–protein pairs in 9.6 ms