RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 KRTAP8-1Q8IUC2 63 aa3.95□□□□□ -1.78
CD44-207ENST00000425428 PP632Q6XCG6 107 aa3.89□□□□□ -1.79
CD44-207ENST00000425428 KRTAP23-1A1A580 65 aa3.88□□□□□ -1.79
CD44-207ENST00000425428 KRTAP6-3Q3LI67 103 aa3.86□□□□□ -1.79
CD44-207ENST00000425428 LCE3AQ5TA76 89 aa3.85□□□□□ -1.79
CD44-207ENST00000425428 SPRR2FQ96RM1 72 aa3.84□□□□□ -1.8
CD44-207ENST00000425428 SYNE2Q8WXH0 6885 aaKnown RBP3.83□□□□□ -1.8
CD44-207ENST00000425428 PRAC1Q96KF2 57 aa3.83□□□□□ -1.8
CD44-207ENST00000425428 KMT2DO14686 5537 aa3.83□□□□□ -1.8
CD44-207ENST00000425428 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.82□□□□□ -1.8
CD44-207ENST00000425428 KRTAP5-9P26371 169 aa3.79□□□□□ -1.8
CD44-207ENST00000425428 KRTAP19-5Q3LI72 72 aa3.76□□□□□ -1.81
CD44-207ENST00000425428 KRTAP12-3P60328 96 aa3.75□□□□□ -1.81
CD44-207ENST00000425428 KRTAP19-7Q3SYF9 63 aa3.71□□□□□ -1.82
CD44-207ENST00000425428 A0A0A0MQY5 61 aa3.7□□□□□ -1.82
CD44-207ENST00000425428 SPRR2EP22531 72 aa3.7□□□□□ -1.82
CD44-207ENST00000425428 SPRR2BP35325 72 aa3.7□□□□□ -1.82
CD44-207ENST00000425428 SPRR2AP35326 72 aa3.7□□□□□ -1.82
CD44-207ENST00000425428 MT1EP04732 61 aa3.69□□□□□ -1.82
CD44-207ENST00000425428 MUC12Q9UKN1 5478 aa3.63□□□□□ -1.83
CD44-207ENST00000425428 KRTAP15-1Q3LI76 137 aa3.63□□□□□ -1.83
CD44-207ENST00000425428 LCE1AQ5T7P2 110 aa3.62□□□□□ -1.83
CD44-207ENST00000425428 KRTAP19-3Q7Z4W3 81 aa3.62□□□□□ -1.83
CD44-207ENST00000425428 MT1GP13640 62 aa3.61□□□□□ -1.83
CD44-207ENST00000425428 MT1LQ93083 61 aa3.59□□□□□ -1.83
CD44-207ENST00000425428 SPRR2DP22532 72 aa3.58□□□□□ -1.84
CD44-207ENST00000425428 MDN1Q9NU22 5596 aa3.57□□□□□ -1.84
CD44-207ENST00000425428 NEBP20929 6669 aa3.56□□□□□ -1.84
CD44-207ENST00000425428 MT1MQ8N339 61 aa3.5□□□□□ -1.85
CD44-207ENST00000425428 LCE3CQ5T5A8 94 aa3.48□□□□□ -1.85
CD44-207ENST00000425428 KRTAP2-3P0C7H8 128 aa3.46□□□□□ -1.86
CD44-207ENST00000425428 KRTAP2-4Q9BYR9 128 aa3.46□□□□□ -1.86
CD44-207ENST00000425428 KRTAP20-1Q3LI63 56 aa3.45□□□□□ -1.86
CD44-207ENST00000425428 KRTAP5-11Q6L8G4 156 aa3.43□□□□□ -1.86
CD44-207ENST00000425428 KRTAP2-2Q9BYT5 123 aa3.37□□□□□ -1.87
CD44-207ENST00000425428 KRTAP2-1Q9BYU5 128 aa3.37□□□□□ -1.87
CD44-207ENST00000425428 KRTAP4-3Q9BYR4 195 aa3.35□□□□□ -1.87
CD44-207ENST00000425428 DSTQ03001 7570 aaKnown RBP3.35□□□□□ -1.87
CD44-207ENST00000425428 NDUFAF8A1L188 74 aa3.28□□□□□ -1.89
CD44-207ENST00000425428 KRTAP5-4Q6L8H1 288 aa3.23□□□□□ -1.89
CD44-207ENST00000425428 LUZP6Q538Z0 58 aa3.22□□□□□ -1.89
CD44-207ENST00000425428 SPRR5A0A1B0GTR4 108 aa3.2□□□□□ -1.9
CD44-207ENST00000425428 KRTAP5-1Q6L8H4 278 aa3.2□□□□□ -1.9
CD44-207ENST00000425428 KRTAP9-6A8MVA2 160 aa3.15□□□□□ -1.9
CD44-207ENST00000425428 KRTAP4-4Q9BYR3 166 aa3.15□□□□□ -1.91
CD44-207ENST00000425428 KRTAP5-5Q701N2 237 aaPredicted RBP3.12□□□□□ -1.91
CD44-207ENST00000425428 KRTAP12-4P60329 112 aa3.11□□□□□ -1.91
CD44-207ENST00000425428 MT1AP04731 61 aa3.08□□□□□ -1.92
CD44-207ENST00000425428 MT4P47944 62 aa3.08□□□□□ -1.92
CD44-207ENST00000425428 KRTAP6-1Q3LI64 71 aa3□□□□□ -1.93
CD44-207ENST00000425428 LCE1EQ5T753 118 aa2.97□□□□□ -1.93
CD44-207ENST00000425428 SYNE1Q8NF91 8797 aaKnown RBP2.96□□□□□ -1.94
CD44-207ENST00000425428 GPR98Q8WXG9 6306 aa2.93□□□□□ -1.94
CD44-207ENST00000425428 KRTAP20-2Q3LI61 65 aa2.93□□□□□ -1.94
CD44-207ENST00000425428 HMCN1Q96RW7 5635 aa2.92□□□□□ -1.94
CD44-207ENST00000425428 MT3P25713 68 aa2.85□□□□□ -1.95
CD44-207ENST00000425428 KRTAP6-2Q3LI66 62 aa2.83□□□□□ -1.96
CD44-207ENST00000425428 KRTAP5-2Q701N4 177 aa2.81□□□□□ -1.96
CD44-207ENST00000425428 AHNAK2Q8IVF2 5795 aa2.71□□□□□ -1.98
CD44-207ENST00000425428 INE1O15225 51 aa2.7□□□□□ -1.98
CD44-207ENST00000425428 OBSCNQ5VST9 7968 aa2.67□□□□□ -1.98
CD44-207ENST00000425428 KRTAP5-10Q6L8G5 202 aa2.61□□□□□ -1.99
CD44-207ENST00000425428 LCE3DQ9BYE3 92 aa2.61□□□□□ -1.99
CD44-207ENST00000425428 LCE3EQ5T5B0 92 aa2.51□□□□□ -2.01
CD44-207ENST00000425428 KRTAP5-7Q6L8G8 165 aa2.49□□□□□ -2.01
CD44-207ENST00000425428 KRTAP5-8O75690 187 aa2.47□□□□□ -2.01
CD44-207ENST00000425428 LCE1BQ5T7P3 118 aa2.36□□□□□ -2.03
CD44-207ENST00000425428 MUC5ACP98088 5654 aa2.33□□□□□ -2.04
CD44-207ENST00000425428 LCE1CQ5T751 118 aa2.31□□□□□ -2.04
CD44-207ENST00000425428 AHNAKQ09666 5890 aaKnown RBP2.23□□□□□ -2.05
CD44-207ENST00000425428 MUC5BQ9HC84 5762 aaPredicted RBP2.19□□□□□ -2.06
CD44-207ENST00000425428 LCE1FQ5T754 118 aa2.14□□□□□ -2.07
CD44-207ENST00000425428 PRM1P04553 51 aa2.06□□□□□ -2.08
CD44-207ENST00000425428 KRTAP21-2Q3LI59 83 aa1.95□□□□□ -2.1
CD44-207ENST00000425428 PHGR1C9JFL3 82 aa1.75□□□□□ -2.13
CD44-207ENST00000425428 MUC19Q7Z5P9 8384 aa1.6□□□□□ -2.15
CD44-207ENST00000425428 KRTAP21-1Q3LI58 79 aa1.2□□□□□ -2.22
CD44-207ENST00000425428 MUC16Q8WXI7 14507 aa1.13□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 150.2 ms