RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 SPRR2DP22532 72 aa6.26□□□□□ -1.41
COL7A1-202ENST00000422991 KRTAP23-1A1A580 65 aa6.2□□□□□ -1.42
COL7A1-202ENST00000422991 KRTAP2-2Q9BYT5 123 aa6.19□□□□□ -1.42
COL7A1-202ENST00000422991 KRTAP2-1Q9BYU5 128 aa6.19□□□□□ -1.42
COL7A1-202ENST00000422991 KRTAP12-3P60328 96 aa6.15□□□□□ -1.42
COL7A1-202ENST00000422991 KRTAP19-3Q7Z4W3 81 aa6.13□□□□□ -1.43
COL7A1-202ENST00000422991 LCE5AQ5TCM9 118 aa6.1□□□□□ -1.43
COL7A1-202ENST00000422991 LCE3BQ5TA77 95 aa6.09□□□□□ -1.43
COL7A1-202ENST00000422991 MT1LQ93083 61 aa6.09□□□□□ -1.43
COL7A1-202ENST00000422991 PP632Q6XCG6 107 aa6.07□□□□□ -1.44
COL7A1-202ENST00000422991 MT1GP13640 62 aa6.03□□□□□ -1.44
COL7A1-202ENST00000422991 PMAIP1Q13794 54 aa6□□□□□ -1.45
COL7A1-202ENST00000422991 PRO0628Q9UI54 55 aa5.97□□□□□ -1.45
COL7A1-202ENST00000422991 MT1MQ8N339 61 aa5.95□□□□□ -1.46
COL7A1-202ENST00000422991 KRTAP15-1Q3LI76 137 aa5.89□□□□□ -1.47
COL7A1-202ENST00000422991 DSTQ03001 7570 aaKnown RBP5.84□□□□□ -1.47
COL7A1-202ENST00000422991 KRTAP19-4Q3LI73 84 aa5.81□□□□□ -1.48
COL7A1-202ENST00000422991 KRTAP4-7Q9BYR0 210 aa5.8□□□□□ -1.48
COL7A1-202ENST00000422991 KRTAP4-3Q9BYR4 195 aa5.79□□□□□ -1.48
COL7A1-202ENST00000422991 LCE3CQ5T5A8 94 aa5.7□□□□□ -1.5
COL7A1-202ENST00000422991 PRAC1Q96KF2 57 aa5.7□□□□□ -1.5
COL7A1-202ENST00000422991 GPR98Q8WXG9 6306 aa5.69□□□□□ -1.5
COL7A1-202ENST00000422991 KRTAP4-9Q9BYQ8 210 aa5.63□□□□□ -1.51
COL7A1-202ENST00000422991 KTN1-AS1Q86SY8 53 aa5.61□□□□□ -1.51
COL7A1-202ENST00000422991 LCE4AQ5TA78 99 aa5.55□□□□□ -1.52
COL7A1-202ENST00000422991 LCE1DQ5T752 114 aa5.52□□□□□ -1.53
COL7A1-202ENST00000422991 LOC100996750A0A140TA64 210 aa5.47□□□□□ -1.53
COL7A1-202ENST00000422991 HMCN1Q96RW7 5635 aa5.46□□□□□ -1.54
COL7A1-202ENST00000422991 MT4P47944 62 aa5.46□□□□□ -1.54
COL7A1-202ENST00000422991 KRTAP5-4Q6L8H1 288 aa5.44□□□□□ -1.54
COL7A1-202ENST00000422991 KRTAP5-5Q701N2 237 aaPredicted RBP5.43□□□□□ -1.54
COL7A1-202ENST00000422991 KRTAP9-6A8MVA2 160 aa5.39□□□□□ -1.55
COL7A1-202ENST00000422991 KRTAP4-6Q9BYQ5 205 aa5.31□□□□□ -1.56
COL7A1-202ENST00000422991 SVIPQ8NHG7 77 aa5.3□□□□□ -1.56
COL7A1-202ENST00000422991 AHNAK2Q8IVF2 5795 aa5.29□□□□□ -1.56
COL7A1-202ENST00000422991 SPRR5A0A1B0GTR4 108 aa5.19□□□□□ -1.58
COL7A1-202ENST00000422991 MT1AP04731 61 aa5.18□□□□□ -1.58
COL7A1-202ENST00000422991 KRTAP12-4P60329 112 aa5.14□□□□□ -1.59
COL7A1-202ENST00000422991 KRTAP20-2Q3LI61 65 aa5.13□□□□□ -1.59
COL7A1-202ENST00000422991 KRTAP6-1Q3LI64 71 aa5.13□□□□□ -1.59
COL7A1-202ENST00000422991 KRTAP5-10Q6L8G5 202 aa5.12□□□□□ -1.59
COL7A1-202ENST00000422991 SYNE1Q8NF91 8797 aaKnown RBP5.05□□□□□ -1.6
COL7A1-202ENST00000422991 KRTAP5-3Q6L8H2 238 aa5.01□□□□□ -1.61
COL7A1-202ENST00000422991 KRTAP9-4Q9BYQ2 154 aa4.94□□□□□ -1.62
COL7A1-202ENST00000422991 KRTAP5-7Q6L8G8 165 aa4.93□□□□□ -1.62
COL7A1-202ENST00000422991 KRTAP5-2Q701N4 177 aa4.84□□□□□ -1.63
COL7A1-202ENST00000422991 KRTAP6-2Q3LI66 62 aa4.8□□□□□ -1.64
COL7A1-202ENST00000422991 MT3P25713 68 aa4.7□□□□□ -1.66
COL7A1-202ENST00000422991 LUZP6Q538Z0 58 aa4.7□□□□□ -1.66
COL7A1-202ENST00000422991 KRTAP4-11Q9BYQ6 195 aa4.68□□□□□ -1.66
COL7A1-202ENST00000422991 KRTAP5-8O75690 187 aa4.52□□□□□ -1.69
COL7A1-202ENST00000422991 OBSCNQ5VST9 7968 aa4.47□□□□□ -1.69
COL7A1-202ENST00000422991 AHNAKQ09666 5890 aaKnown RBP4.44□□□□□ -1.7
COL7A1-202ENST00000422991 MUC5BQ9HC84 5762 aaPredicted RBP4.37□□□□□ -1.71
COL7A1-202ENST00000422991 MUC5ACP98088 5654 aa4.36□□□□□ -1.71
COL7A1-202ENST00000422991 KRTAP9-9Q9BYP9 154 aa4.3□□□□□ -1.72
COL7A1-202ENST00000422991 KRTAP5-1Q6L8H4 278 aa4.26□□□□□ -1.73
COL7A1-202ENST00000422991 NDUFAF8A1L188 74 aa4.23□□□□□ -1.73
COL7A1-202ENST00000422991 LCE1EQ5T753 118 aa4.22□□□□□ -1.73
COL7A1-202ENST00000422991 LCE3DQ9BYE3 92 aa4.19□□□□□ -1.74
COL7A1-202ENST00000422991 LCE3EQ5T5B0 92 aa4.02□□□□□ -1.77
COL7A1-202ENST00000422991 KRTAP4-2Q9BYR5 136 aa3.96□□□□□ -1.78
COL7A1-202ENST00000422991 LCE1CQ5T751 118 aa3.92□□□□□ -1.78
COL7A1-202ENST00000422991 LCE1BQ5T7P3 118 aa3.92□□□□□ -1.78
COL7A1-202ENST00000422991 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.64□□□□□ -1.83
COL7A1-202ENST00000422991 A0A0A0MQY5 61 aa3.56□□□□□ -1.84
COL7A1-202ENST00000422991 KRTAP5-11Q6L8G4 156 aa3.52□□□□□ -1.85
COL7A1-202ENST00000422991 INE1O15225 51 aa3.48□□□□□ -1.85
COL7A1-202ENST00000422991 KRTAP4-12Q9BQ66 201 aa3.48□□□□□ -1.85
COL7A1-202ENST00000422991 KRTAP21-2Q3LI59 83 aa3.37□□□□□ -1.87
COL7A1-202ENST00000422991 LCE1FQ5T754 118 aa3.37□□□□□ -1.87
COL7A1-202ENST00000422991 PRM1P04553 51 aa3.28□□□□□ -1.88
COL7A1-202ENST00000422991 PHGR1C9JFL3 82 aa3.02□□□□□ -1.93
COL7A1-202ENST00000422991 KRTAP4-4Q9BYR3 166 aa3.01□□□□□ -1.93
COL7A1-202ENST00000422991 H3BS24 57 aa2.77□□□□□ -1.97
COL7A1-202ENST00000422991 MUC19Q7Z5P9 8384 aa2.77□□□□□ -1.97
COL7A1-202ENST00000422991 KRTAP21-1Q3LI58 79 aa2.27□□□□□ -2.05
COL7A1-202ENST00000422991 MUC16Q8WXI7 14507 aa1.97□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 5.9 ms