RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 KRTAP4-8Q9BYQ9 185 aa4.07□□□□□ -1.76
PTPRF-205ENST00000414879 MT1LQ93083 61 aa4.04□□□□□ -1.76
PTPRF-205ENST00000414879 MT1EP04732 61 aa4.02□□□□□ -1.77
PTPRF-205ENST00000414879 LCE3BQ5TA77 95 aa3.9□□□□□ -1.78
PTPRF-205ENST00000414879 MT1MQ8N339 61 aa3.87□□□□□ -1.79
PTPRF-205ENST00000414879 LCE3DQ9BYE3 92 aa3.82□□□□□ -1.8
PTPRF-205ENST00000414879 FSIP2Q5CZC0 6907 aa3.81□□□□□ -1.8
PTPRF-205ENST00000414879 LCE3EQ5T5B0 92 aa3.78□□□□□ -1.8
PTPRF-205ENST00000414879 KRTAP9-7A8MTY7 169 aa3.77□□□□□ -1.81
PTPRF-205ENST00000414879 KRTAP19-7Q3SYF9 63 aa3.76□□□□□ -1.81
PTPRF-205ENST00000414879 LCE1AQ5T7P2 110 aa3.75□□□□□ -1.81
PTPRF-205ENST00000414879 MT3P25713 68 aa3.74□□□□□ -1.81
PTPRF-205ENST00000414879 KRTAP4-7Q9BYR0 210 aa3.71□□□□□ -1.82
PTPRF-205ENST00000414879 KRTAP6-3Q3LI67 103 aa3.69□□□□□ -1.82
PTPRF-205ENST00000414879 USH2AO75445 5202 aa3.65□□□□□ -1.82
PTPRF-205ENST00000414879 MT1AP04731 61 aa3.64□□□□□ -1.83
PTPRF-205ENST00000414879 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.63□□□□□ -1.83
PTPRF-205ENST00000414879 KRTAP20-1Q3LI63 56 aa3.62□□□□□ -1.83
PTPRF-205ENST00000414879 SSPOA2VEC9 5147 aa3.55□□□□□ -1.84
PTPRF-205ENST00000414879 SYNE2Q8WXH0 6885 aaKnown RBP3.52□□□□□ -1.85
PTPRF-205ENST00000414879 LCE5AQ5TCM9 118 aa3.52□□□□□ -1.85
PTPRF-205ENST00000414879 KRTAP2-3P0C7H8 128 aa3.51□□□□□ -1.85
PTPRF-205ENST00000414879 KRTAP4-3Q9BYR4 195 aa3.51□□□□□ -1.85
PTPRF-205ENST00000414879 KRTAP2-4Q9BYR9 128 aa3.51□□□□□ -1.85
PTPRF-205ENST00000414879 KRTAP2-1Q9BYU5 128 aa3.51□□□□□ -1.85
PTPRF-205ENST00000414879 MT4P47944 62 aa3.5□□□□□ -1.85
PTPRF-205ENST00000414879 LOC100996750A0A140TA64 210 aa3.49□□□□□ -1.85
PTPRF-205ENST00000414879 SYNE1Q8NF91 8797 aaKnown RBP3.47□□□□□ -1.85
PTPRF-205ENST00000414879 LCE4AQ5TA78 99 aa3.47□□□□□ -1.85
PTPRF-205ENST00000414879 KRTAP2-2Q9BYT5 123 aa3.38□□□□□ -1.87
PTPRF-205ENST00000414879 KRTAP5-9P26371 169 aa3.35□□□□□ -1.87
PTPRF-205ENST00000414879 KRTAP9-4Q9BYQ2 154 aa3.35□□□□□ -1.87
PTPRF-205ENST00000414879 FCGBPQ9Y6R7 5405 aaPredicted RBP3.3□□□□□ -1.88
PTPRF-205ENST00000414879 KRTAP9-6A8MVA2 160 aa3.29□□□□□ -1.88
PTPRF-205ENST00000414879 LCE1DQ5T752 114 aa3.29□□□□□ -1.88
PTPRF-205ENST00000414879 KRTAP6-1Q3LI64 71 aa3.28□□□□□ -1.88
PTPRF-205ENST00000414879 PRM1P04553 51 aa3.27□□□□□ -1.89
PTPRF-205ENST00000414879 LCE1BQ5T7P3 118 aa3.25□□□□□ -1.89
PTPRF-205ENST00000414879 KMT2DO14686 5537 aa3.24□□□□□ -1.89
PTPRF-205ENST00000414879 KRTAP6-2Q3LI66 62 aa3.21□□□□□ -1.9
PTPRF-205ENST00000414879 MACF1Q9UPN3 7388 aaKnown RBP3.13□□□□□ -1.91
PTPRF-205ENST00000414879 KRTAP4-9Q9BYQ8 210 aa3.12□□□□□ -1.91
PTPRF-205ENST00000414879 NEBP20929 6669 aa3.12□□□□□ -1.91
PTPRF-205ENST00000414879 OBSCNQ5VST9 7968 aa3.06□□□□□ -1.92
PTPRF-205ENST00000414879 DSTQ03001 7570 aaKnown RBP3.02□□□□□ -1.93
PTPRF-205ENST00000414879 KRTAP5-5Q701N2 237 aaPredicted RBP2.98□□□□□ -1.93
PTPRF-205ENST00000414879 MUC12Q9UKN1 5478 aa2.95□□□□□ -1.94
PTPRF-205ENST00000414879 GPR98Q8WXG9 6306 aa2.89□□□□□ -1.95
PTPRF-205ENST00000414879 MDN1Q9NU22 5596 aa2.88□□□□□ -1.95
PTPRF-205ENST00000414879 KRTAP20-2Q3LI61 65 aa2.86□□□□□ -1.95
PTPRF-205ENST00000414879 KRTAP9-9Q9BYP9 154 aa2.82□□□□□ -1.96
PTPRF-205ENST00000414879 KRTAP5-4Q6L8H1 288 aa2.8□□□□□ -1.96
PTPRF-205ENST00000414879 KRTAP4-6Q9BYQ5 205 aa2.76□□□□□ -1.97
PTPRF-205ENST00000414879 LCE1CQ5T751 118 aa2.71□□□□□ -1.98
PTPRF-205ENST00000414879 LCE1EQ5T753 118 aa2.71□□□□□ -1.98
PTPRF-205ENST00000414879 LCE1FQ5T754 118 aa2.71□□□□□ -1.98
PTPRF-205ENST00000414879 KRTAP4-11Q9BYQ6 195 aa2.56□□□□□ -2
PTPRF-205ENST00000414879 KRTAP5-2Q701N4 177 aa2.56□□□□□ -2
PTPRF-205ENST00000414879 KRTAP5-3Q6L8H2 238 aa2.48□□□□□ -2.01
PTPRF-205ENST00000414879 MUC19Q7Z5P9 8384 aa2.45□□□□□ -2.02
PTPRF-205ENST00000414879 AHNAK2Q8IVF2 5795 aa2.38□□□□□ -2.03
PTPRF-205ENST00000414879 HMCN1Q96RW7 5635 aa2.32□□□□□ -2.04
PTPRF-205ENST00000414879 KRTAP4-12Q9BQ66 201 aa2.21□□□□□ -2.06
PTPRF-205ENST00000414879 KRTAP4-2Q9BYR5 136 aa2.21□□□□□ -2.06
PTPRF-205ENST00000414879 MUC5ACP98088 5654 aa2.2□□□□□ -2.06
PTPRF-205ENST00000414879 KRTAP5-8O75690 187 aa2.17□□□□□ -2.06
PTPRF-205ENST00000414879 KRTAP5-10Q6L8G5 202 aa2.16□□□□□ -2.06
PTPRF-205ENST00000414879 KRTAP4-4Q9BYR3 166 aa2.16□□□□□ -2.06
PTPRF-205ENST00000414879 KRTAP5-1Q6L8H4 278 aa2.15□□□□□ -2.07
PTPRF-205ENST00000414879 KRTAP5-7Q6L8G8 165 aa2.11□□□□□ -2.07
PTPRF-205ENST00000414879 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.07□□□□□ -2.08
PTPRF-205ENST00000414879 AHNAKQ09666 5890 aaKnown RBP2.04□□□□□ -2.08
PTPRF-205ENST00000414879 KRTAP5-11Q6L8G4 156 aa2.02□□□□□ -2.09
PTPRF-205ENST00000414879 MUC5BQ9HC84 5762 aaPredicted RBP1.93□□□□□ -2.1
PTPRF-205ENST00000414879 KRTAP21-2Q3LI59 83 aa1.91□□□□□ -2.1
PTPRF-205ENST00000414879 PHGR1C9JFL3 82 aa1.85□□□□□ -2.11
PTPRF-205ENST00000414879 KRTAP21-1Q3LI58 79 aa1.55□□□□□ -2.16
PTPRF-205ENST00000414879 MUC16Q8WXI7 14507 aa1.11□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 5.4 ms