RNA–Protein interactions for RNA: ENST00000412272.6

HERC4-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-205ENST00000412272 KRTAP4-9Q9BYQ8 210 aa1.77□□□□□ -2.13
HERC4-205ENST00000412272 KRTAP9-9Q9BYP9 154 aa1.76□□□□□ -2.13
HERC4-205ENST00000412272 KRTAP9-4Q9BYQ2 154 aa1.76□□□□□ -2.13
HERC4-205ENST00000412272 M0R2T5 61 aa1.75□□□□□ -2.13
HERC4-205ENST00000412272 MT1BP07438 61 aa1.72□□□□□ -2.13
HERC4-205ENST00000412272 GPR98Q8WXG9 6306 aa1.69□□□□□ -2.14
HERC4-205ENST00000412272 KRTAP4-11Q9BYQ6 195 aa1.67□□□□□ -2.14
HERC4-205ENST00000412272 KRTAP4-5Q9BYR2 181 aa1.67□□□□□ -2.14
HERC4-205ENST00000412272 MT2AP02795 61 aa1.66□□□□□ -2.14
HERC4-205ENST00000412272 MT1FP04733 61 aa1.66□□□□□ -2.14
HERC4-205ENST00000412272 KRTAP9-8Q9BYQ0 159 aa1.64□□□□□ -2.15
HERC4-205ENST00000412272 PRM1P04553 51 aa1.64□□□□□ -2.15
HERC4-205ENST00000412272 USH2AO75445 5202 aa1.63□□□□□ -2.15
HERC4-205ENST00000412272 KRTAP9-7A8MTY7 169 aa1.62□□□□□ -2.15
HERC4-205ENST00000412272 MT1EP04732 61 aa1.62□□□□□ -2.15
HERC4-205ENST00000412272 KRTAP4-2Q9BYR5 136 aa1.61□□□□□ -2.15
HERC4-205ENST00000412272 SSPOA2VEC9 5147 aa1.61□□□□□ -2.15
HERC4-205ENST00000412272 MT1HP80294 61 aa1.61□□□□□ -2.15
HERC4-205ENST00000412272 KRTAP5-5Q701N2 237 aaPredicted RBP1.61□□□□□ -2.15
HERC4-205ENST00000412272 FSIP2Q5CZC0 6907 aa1.6□□□□□ -2.15
HERC4-205ENST00000412272 MT1AP04731 61 aa1.59□□□□□ -2.16
HERC4-205ENST00000412272 KRTAP19-7Q3SYF9 63 aa1.59□□□□□ -2.16
HERC4-205ENST00000412272 KRTAP9-3Q9BYQ3 159 aa1.57□□□□□ -2.16
HERC4-205ENST00000412272 MT1LQ93083 61 aa1.57□□□□□ -2.16
HERC4-205ENST00000412272 MT3P25713 68 aa1.57□□□□□ -2.16
HERC4-205ENST00000412272 CRCT1Q9UGL9 99 aa1.56□□□□□ -2.16
HERC4-205ENST00000412272 MUC12Q9UKN1 5478 aa1.54□□□□□ -2.16
HERC4-205ENST00000412272 SYNE1Q8NF91 8797 aaKnown RBP1.52□□□□□ -2.17
HERC4-205ENST00000412272 LCE3EQ5T5B0 92 aa1.52□□□□□ -2.17
HERC4-205ENST00000412272 LCE4AQ5TA78 99 aa1.52□□□□□ -2.17
HERC4-205ENST00000412272 LCE3DQ9BYE3 92 aa1.48□□□□□ -2.17
HERC4-205ENST00000412272 KRTAP5-3Q6L8H2 238 aa1.47□□□□□ -2.17
HERC4-205ENST00000412272 FCGBPQ9Y6R7 5405 aaPredicted RBP1.45□□□□□ -2.18
HERC4-205ENST00000412272 MACF1Q9UPN3 7388 aaKnown RBP1.45□□□□□ -2.18
HERC4-205ENST00000412272 HMCN1Q96RW7 5635 aa1.44□□□□□ -2.18
HERC4-205ENST00000412272 MDN1Q9NU22 5596 aa1.44□□□□□ -2.18
HERC4-205ENST00000412272 KRTAP6-2Q3LI66 62 aa1.44□□□□□ -2.18
HERC4-205ENST00000412272 KMT2DO14686 5537 aa1.43□□□□□ -2.18
HERC4-205ENST00000412272 SYNE2Q8WXH0 6885 aaKnown RBP1.43□□□□□ -2.18
HERC4-205ENST00000412272 NEBP20929 6669 aa1.41□□□□□ -2.18
HERC4-205ENST00000412272 SPRR2FQ96RM1 72 aa1.4□□□□□ -2.19
HERC4-205ENST00000412272 MT1GP13640 62 aa1.39□□□□□ -2.19
HERC4-205ENST00000412272 KRTAP20-1Q3LI63 56 aa1.39□□□□□ -2.19
HERC4-205ENST00000412272 MT1MQ8N339 61 aa1.39□□□□□ -2.19
HERC4-205ENST00000412272 OBSCNQ5VST9 7968 aa1.38□□□□□ -2.19
HERC4-205ENST00000412272 KRTAP19-3Q7Z4W3 81 aa1.35□□□□□ -2.19
HERC4-205ENST00000412272 SPRR2AP35326 72 aa1.34□□□□□ -2.2
HERC4-205ENST00000412272 KRTAP4-3Q9BYR4 195 aa1.33□□□□□ -2.2
HERC4-205ENST00000412272 MUC5BQ9HC84 5762 aaPredicted RBP1.32□□□□□ -2.2
HERC4-205ENST00000412272 KRTAP6-1Q3LI64 71 aa1.29□□□□□ -2.2
HERC4-205ENST00000412272 SPRR2BP35325 72 aa1.29□□□□□ -2.2
HERC4-205ENST00000412272 KRTAP5-2Q701N4 177 aa1.28□□□□□ -2.2
HERC4-205ENST00000412272 SPRR2EP22531 72 aa1.27□□□□□ -2.21
HERC4-205ENST00000412272 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.25□□□□□ -2.21
HERC4-205ENST00000412272 AHNAKQ09666 5890 aaKnown RBP1.24□□□□□ -2.21
HERC4-205ENST00000412272 SPRR2DP22532 72 aa1.24□□□□□ -2.21
HERC4-205ENST00000412272 KRTAP19-6Q3LI70 58 aa1.24□□□□□ -2.21
HERC4-205ENST00000412272 LCE1CQ5T751 118 aa1.23□□□□□ -2.21
HERC4-205ENST00000412272 LCE1BQ5T7P3 118 aa1.23□□□□□ -2.21
HERC4-205ENST00000412272 DSTQ03001 7570 aaKnown RBP1.21□□□□□ -2.22
HERC4-205ENST00000412272 MUC19Q7Z5P9 8384 aa1.2□□□□□ -2.22
HERC4-205ENST00000412272 KRTAP5-9P26371 169 aa1.18□□□□□ -2.22
HERC4-205ENST00000412272 AHNAK2Q8IVF2 5795 aa1.16□□□□□ -2.22
HERC4-205ENST00000412272 KRTAP21-1Q3LI58 79 aa1.13□□□□□ -2.23
HERC4-205ENST00000412272 KRTAP5-10Q6L8G5 202 aa1.06□□□□□ -2.24
HERC4-205ENST00000412272 KRTAP5-1Q6L8H4 278 aa1.06□□□□□ -2.24
HERC4-205ENST00000412272 KRTAP5-4Q6L8H1 288 aa1.03□□□□□ -2.25
HERC4-205ENST00000412272 KRTAP5-11Q6L8G4 156 aa1.01□□□□□ -2.25
HERC4-205ENST00000412272 MUC5ACP98088 5654 aa1□□□□□ -2.25
HERC4-205ENST00000412272 KRTAP5-7Q6L8G8 165 aa1□□□□□ -2.25
HERC4-205ENST00000412272 KRTAP5-8O75690 187 aa0.95□□□□□ -2.26
HERC4-205ENST00000412272 MT4P47944 62 aa0.95□□□□□ -2.26
HERC4-205ENST00000412272 KRTAP4-4Q9BYR3 166 aa0.9□□□□□ -2.26
HERC4-205ENST00000412272 KRTAP21-2Q3LI59 83 aa0.88□□□□□ -2.27
HERC4-205ENST00000412272 KRTAP20-2Q3LI61 65 aa0.83□□□□□ -2.28
HERC4-205ENST00000412272 PHGR1C9JFL3 82 aa0.72□□□□□ -2.29
HERC4-205ENST00000412272 MUC16Q8WXI7 14507 aa0.55□□□□□ -2.32
Retrieved 77 of 20,778 RNA–protein pairs in 5.5 ms