RNA–Protein interactions for RNA: ENST00000410011.5

LIMS2-208, Transcript of LIM zinc finger domain containing 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS2, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-208ENST00000410011 LCE2DQ5TA82 110 aaPredicted RBP5.4□□□□□ -1.54
LIMS2-208ENST00000410011 KRTAP19-3Q7Z4W3 81 aa5.39□□□□□ -1.55
LIMS2-208ENST00000410011 FSIP2Q5CZC0 6907 aa5.38□□□□□ -1.55
LIMS2-208ENST00000410011 MT1MQ8N339 61 aa5.37□□□□□ -1.55
LIMS2-208ENST00000410011 KRTAP4-3Q9BYR4 195 aa5.34□□□□□ -1.56
LIMS2-208ENST00000410011 LOC100996750A0A140TA64 210 aa5.33□□□□□ -1.56
LIMS2-208ENST00000410011 FCGBPQ9Y6R7 5405 aaPredicted RBP5.22□□□□□ -1.57
LIMS2-208ENST00000410011 LCE5AQ5TCM9 118 aa5.22□□□□□ -1.57
LIMS2-208ENST00000410011 MUC12Q9UKN1 5478 aa5.16□□□□□ -1.58
LIMS2-208ENST00000410011 SPRR2FQ96RM1 72 aa5.08□□□□□ -1.6
LIMS2-208ENST00000410011 CRCT1Q9UGL9 99 aa5.08□□□□□ -1.6
LIMS2-208ENST00000410011 KRTAP12-4P60329 112 aa5.06□□□□□ -1.6
LIMS2-208ENST00000410011 MT1AP04731 61 aa4.97□□□□□ -1.61
LIMS2-208ENST00000410011 LCE3BQ5TA77 95 aa4.9□□□□□ -1.62
LIMS2-208ENST00000410011 MACF1Q9UPN3 7388 aaKnown RBP4.89□□□□□ -1.63
LIMS2-208ENST00000410011 DSTQ03001 7570 aaKnown RBP4.88□□□□□ -1.63
LIMS2-208ENST00000410011 KRTAP6-1Q3LI64 71 aa4.86□□□□□ -1.63
LIMS2-208ENST00000410011 KRTAP9-2Q9BYQ4 174 aa4.84□□□□□ -1.63
LIMS2-208ENST00000410011 KRTAP5-9P26371 169 aa4.81□□□□□ -1.64
LIMS2-208ENST00000410011 KRTAP5-5Q701N2 237 aaPredicted RBP4.8□□□□□ -1.64
LIMS2-208ENST00000410011 LCE1AQ5T7P2 110 aa4.79□□□□□ -1.64
LIMS2-208ENST00000410011 KRTAP4-9Q9BYQ8 210 aa4.77□□□□□ -1.65
LIMS2-208ENST00000410011 LCE3DQ9BYE3 92 aa4.74□□□□□ -1.65
LIMS2-208ENST00000410011 SYNE2Q8WXH0 6885 aaKnown RBP4.72□□□□□ -1.65
LIMS2-208ENST00000410011 LCE3EQ5T5B0 92 aa4.7□□□□□ -1.66
LIMS2-208ENST00000410011 MDN1Q9NU22 5596 aa4.69□□□□□ -1.66
LIMS2-208ENST00000410011 SYNE1Q8NF91 8797 aaKnown RBP4.68□□□□□ -1.66
LIMS2-208ENST00000410011 KRTAP9-6A0A140TA67 174 aa4.64□□□□□ -1.67
LIMS2-208ENST00000410011 SPRR2EP22531 72 aa4.6□□□□□ -1.67
LIMS2-208ENST00000410011 SPRR2BP35325 72 aa4.6□□□□□ -1.67
LIMS2-208ENST00000410011 SPRR2AP35326 72 aa4.6□□□□□ -1.67
LIMS2-208ENST00000410011 KRTAP9-4Q9BYQ2 154 aa4.6□□□□□ -1.67
LIMS2-208ENST00000410011 KRTAP9-7A8MTY7 169 aa4.47□□□□□ -1.69
LIMS2-208ENST00000410011 PRM1P04553 51 aa4.45□□□□□ -1.7
LIMS2-208ENST00000410011 SPRR2DP22532 72 aa4.41□□□□□ -1.7
LIMS2-208ENST00000410011 MT3P25713 68 aa4.39□□□□□ -1.71
LIMS2-208ENST00000410011 KRTAP6-2Q3LI66 62 aa4.34□□□□□ -1.72
LIMS2-208ENST00000410011 KRTAP6-3Q3LI67 103 aa4.34□□□□□ -1.72
LIMS2-208ENST00000410011 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.28□□□□□ -1.72
LIMS2-208ENST00000410011 KRTAP5-4Q6L8H1 288 aa4.21□□□□□ -1.74
LIMS2-208ENST00000410011 OBSCNQ5VST9 7968 aa4□□□□□ -1.77
LIMS2-208ENST00000410011 KRTAP2-2Q9BYT5 123 aa3.97□□□□□ -1.77
LIMS2-208ENST00000410011 KRTAP5-2Q701N4 177 aa3.95□□□□□ -1.78
LIMS2-208ENST00000410011 NEBP20929 6669 aa3.94□□□□□ -1.78
LIMS2-208ENST00000410011 LCE4AQ5TA78 99 aa3.92□□□□□ -1.78
LIMS2-208ENST00000410011 KRTAP4-6Q9BYQ5 205 aa3.92□□□□□ -1.78
LIMS2-208ENST00000410011 KRTAP20-2Q3LI61 65 aa3.89□□□□□ -1.79
LIMS2-208ENST00000410011 MT4P47944 62 aa3.86□□□□□ -1.79
LIMS2-208ENST00000410011 KRTAP5-3Q6L8H2 238 aa3.73□□□□□ -1.81
LIMS2-208ENST00000410011 KRTAP20-1Q3LI63 56 aa3.69□□□□□ -1.82
LIMS2-208ENST00000410011 HMCN1Q96RW7 5635 aa3.66□□□□□ -1.82
LIMS2-208ENST00000410011 LCE1DQ5T752 114 aa3.65□□□□□ -1.83
LIMS2-208ENST00000410011 LCE1EQ5T753 118 aa3.64□□□□□ -1.83
LIMS2-208ENST00000410011 MUC5ACP98088 5654 aa3.59□□□□□ -1.83
LIMS2-208ENST00000410011 KRTAP5-10Q6L8G5 202 aa3.48□□□□□ -1.85
LIMS2-208ENST00000410011 KRTAP5-1Q6L8H4 278 aa3.48□□□□□ -1.85
LIMS2-208ENST00000410011 LCE1CQ5T751 118 aa3.41□□□□□ -1.86
LIMS2-208ENST00000410011 LCE1BQ5T7P3 118 aa3.41□□□□□ -1.86
LIMS2-208ENST00000410011 KRTAP4-2Q9BYR5 136 aa3.37□□□□□ -1.87
LIMS2-208ENST00000410011 KRTAP4-11Q9BYQ6 195 aa3.31□□□□□ -1.88
LIMS2-208ENST00000410011 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.27□□□□□ -1.89
LIMS2-208ENST00000410011 KRTAP21-2Q3LI59 83 aa3.18□□□□□ -1.9
LIMS2-208ENST00000410011 KRTAP5-7Q6L8G8 165 aa3.13□□□□□ -1.91
LIMS2-208ENST00000410011 KRTAP5-8O75690 187 aa3.11□□□□□ -1.91
LIMS2-208ENST00000410011 GPR98Q8WXG9 6306 aa3.05□□□□□ -1.92
LIMS2-208ENST00000410011 AHNAK2Q8IVF2 5795 aa2.96□□□□□ -1.94
LIMS2-208ENST00000410011 KRTAP5-11Q6L8G4 156 aa2.92□□□□□ -1.94
LIMS2-208ENST00000410011 KRTAP21-1Q3LI58 79 aa2.88□□□□□ -1.95
LIMS2-208ENST00000410011 LCE1FQ5T754 118 aa2.76□□□□□ -1.97
LIMS2-208ENST00000410011 KRTAP4-4Q9BYR3 166 aa2.76□□□□□ -1.97
LIMS2-208ENST00000410011 MUC5BQ9HC84 5762 aaPredicted RBP2.66□□□□□ -1.98
LIMS2-208ENST00000410011 KRTAP4-12Q9BQ66 201 aa2.61□□□□□ -1.99
LIMS2-208ENST00000410011 KRTAP9-9Q9BYP9 154 aa2.57□□□□□ -2
LIMS2-208ENST00000410011 MUC19Q7Z5P9 8384 aa2.56□□□□□ -2
LIMS2-208ENST00000410011 PHGR1C9JFL3 82 aa2.51□□□□□ -2.01
LIMS2-208ENST00000410011 AHNAKQ09666 5890 aaKnown RBP2.41□□□□□ -2.02
LIMS2-208ENST00000410011 MUC16Q8WXI7 14507 aa1.7□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 115.8 ms