RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 KRTAP2-2Q9BYT5 123 aa7.17□□□□□ -1.26
PDLIM2-207ENST00000409417 KRTAP2-1Q9BYU5 128 aa7.17□□□□□ -1.26
PDLIM2-207ENST00000409417 LCE3BQ5TA77 95 aa7.16□□□□□ -1.26
PDLIM2-207ENST00000409417 MT1GP13640 62 aa7.11□□□□□ -1.27
PDLIM2-207ENST00000409417 MT1LQ93083 61 aa7.1□□□□□ -1.27
PDLIM2-207ENST00000409417 CDC42SE1Q9NRR8 79 aa7.08□□□□□ -1.28
PDLIM2-207ENST00000409417 PP632Q6XCG6 107 aa7.05□□□□□ -1.28
PDLIM2-207ENST00000409417 KRTAP12-3P60328 96 aa7.04□□□□□ -1.28
PDLIM2-207ENST00000409417 MT1MQ8N339 61 aa6.98□□□□□ -1.29
PDLIM2-207ENST00000409417 KRTAP23-1A1A580 65 aa6.96□□□□□ -1.3
PDLIM2-207ENST00000409417 DSTQ03001 7570 aaKnown RBP6.96□□□□□ -1.3
PDLIM2-207ENST00000409417 ROMO1P60602 79 aa6.94□□□□□ -1.3
PDLIM2-207ENST00000409417 PRO0628Q9UI54 55 aa6.83□□□□□ -1.32
PDLIM2-207ENST00000409417 KRTAP4-3Q9BYR4 195 aa6.79□□□□□ -1.32
PDLIM2-207ENST00000409417 KRTAP4-7Q9BYR0 210 aa6.74□□□□□ -1.33
PDLIM2-207ENST00000409417 BRK1Q8WUW1 75 aa6.73□□□□□ -1.33
PDLIM2-207ENST00000409417 KRTAP19-4Q3LI73 84 aa6.7□□□□□ -1.34
PDLIM2-207ENST00000409417 KRTAP15-1Q3LI76 137 aa6.69□□□□□ -1.34
PDLIM2-207ENST00000409417 KRTAP4-9Q9BYQ8 210 aa6.57□□□□□ -1.36
PDLIM2-207ENST00000409417 LCE4AQ5TA78 99 aa6.55□□□□□ -1.36
PDLIM2-207ENST00000409417 LCE3CQ5T5A8 94 aa6.53□□□□□ -1.36
PDLIM2-207ENST00000409417 KRTAP5-4Q6L8H1 288 aa6.5□□□□□ -1.37
PDLIM2-207ENST00000409417 LCE1DQ5T752 114 aa6.46□□□□□ -1.38
PDLIM2-207ENST00000409417 MT4P47944 62 aa6.42□□□□□ -1.38
PDLIM2-207ENST00000409417 HMCN1Q96RW7 5635 aa6.4□□□□□ -1.38
PDLIM2-207ENST00000409417 PMAIP1Q13794 54 aa6.4□□□□□ -1.39
PDLIM2-207ENST00000409417 KRTAP5-5Q701N2 237 aaPredicted RBP6.39□□□□□ -1.39
PDLIM2-207ENST00000409417 LOC100996750A0A140TA64 210 aa6.37□□□□□ -1.39
PDLIM2-207ENST00000409417 KRTAP4-6Q9BYQ5 205 aa6.29□□□□□ -1.4
PDLIM2-207ENST00000409417 KTN1-AS1Q86SY8 53 aa6.27□□□□□ -1.41
PDLIM2-207ENST00000409417 GPR98Q8WXG9 6306 aa6.19□□□□□ -1.42
PDLIM2-207ENST00000409417 KRTAP12-4P60329 112 aa6.15□□□□□ -1.42
PDLIM2-207ENST00000409417 KRTAP9-6A8MVA2 160 aa6.14□□□□□ -1.43
PDLIM2-207ENST00000409417 SPRR5A0A1B0GTR4 108 aa6.13□□□□□ -1.43
PDLIM2-207ENST00000409417 KRTAP20-2Q3LI61 65 aa6.09□□□□□ -1.43
PDLIM2-207ENST00000409417 SYNE1Q8NF91 8797 aaKnown RBP6.08□□□□□ -1.44
PDLIM2-207ENST00000409417 AHNAK2Q8IVF2 5795 aa6.04□□□□□ -1.44
PDLIM2-207ENST00000409417 MT1AP04731 61 aa6.03□□□□□ -1.44
PDLIM2-207ENST00000409417 KRTAP6-1Q3LI64 71 aa5.97□□□□□ -1.45
PDLIM2-207ENST00000409417 PRAC1Q96KF2 57 aa5.95□□□□□ -1.46
PDLIM2-207ENST00000409417 KRTAP5-3Q6L8H2 238 aa5.91□□□□□ -1.46
PDLIM2-207ENST00000409417 KRTAP5-10Q6L8G5 202 aa5.86□□□□□ -1.47
PDLIM2-207ENST00000409417 KRTAP9-4Q9BYQ2 154 aa5.8□□□□□ -1.48
PDLIM2-207ENST00000409417 KRTAP5-2Q701N4 177 aa5.74□□□□□ -1.49
PDLIM2-207ENST00000409417 KRTAP6-2Q3LI66 62 aa5.66□□□□□ -1.5
PDLIM2-207ENST00000409417 KRTAP5-7Q6L8G8 165 aa5.59□□□□□ -1.51
PDLIM2-207ENST00000409417 MT3P25713 68 aa5.51□□□□□ -1.53
PDLIM2-207ENST00000409417 KRTAP4-11Q9BYQ6 195 aa5.51□□□□□ -1.53
PDLIM2-207ENST00000409417 H3BS24 57 aa5.43□□□□□ -1.54
PDLIM2-207ENST00000409417 KRTAP5-8O75690 187 aa5.31□□□□□ -1.56
PDLIM2-207ENST00000409417 OBSCNQ5VST9 7968 aa5.29□□□□□ -1.56
PDLIM2-207ENST00000409417 KRTAP5-1Q6L8H4 278 aa5.09□□□□□ -1.59
PDLIM2-207ENST00000409417 MUC5ACP98088 5654 aa5.01□□□□□ -1.61
PDLIM2-207ENST00000409417 LUZP6Q538Z0 58 aa5□□□□□ -1.61
PDLIM2-207ENST00000409417 LCE1EQ5T753 118 aa5□□□□□ -1.61
PDLIM2-207ENST00000409417 KRTAP9-9Q9BYP9 154 aa4.99□□□□□ -1.61
PDLIM2-207ENST00000409417 MUC5BQ9HC84 5762 aaPredicted RBP4.96□□□□□ -1.62
PDLIM2-207ENST00000409417 AHNAKQ09666 5890 aaKnown RBP4.93□□□□□ -1.62
PDLIM2-207ENST00000409417 NDUFAF8A1L188 74 aa4.91□□□□□ -1.62
PDLIM2-207ENST00000409417 LCE3DQ9BYE3 92 aa4.76□□□□□ -1.65
PDLIM2-207ENST00000409417 KRTAP4-2Q9BYR5 136 aa4.69□□□□□ -1.66
PDLIM2-207ENST00000409417 LCE1BQ5T7P3 118 aa4.66□□□□□ -1.66
PDLIM2-207ENST00000409417 LCE1CQ5T751 118 aa4.64□□□□□ -1.67
PDLIM2-207ENST00000409417 A0A0A0MQY5 61 aa4.62□□□□□ -1.67
PDLIM2-207ENST00000409417 LCE3EQ5T5B0 92 aa4.53□□□□□ -1.68
PDLIM2-207ENST00000409417 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.26□□□□□ -1.73
PDLIM2-207ENST00000409417 INE1O15225 51 aa4.17□□□□□ -1.74
PDLIM2-207ENST00000409417 KRTAP5-11Q6L8G4 156 aa4.17□□□□□ -1.74
PDLIM2-207ENST00000409417 KRTAP4-12Q9BQ66 201 aa4.11□□□□□ -1.75
PDLIM2-207ENST00000409417 LCE1FQ5T754 118 aa3.99□□□□□ -1.77
PDLIM2-207ENST00000409417 KRTAP21-2Q3LI59 83 aa3.94□□□□□ -1.78
PDLIM2-207ENST00000409417 PHGR1C9JFL3 82 aa3.6□□□□□ -1.83
PDLIM2-207ENST00000409417 PRM1P04553 51 aa3.55□□□□□ -1.84
PDLIM2-207ENST00000409417 KRTAP4-4Q9BYR3 166 aa3.54□□□□□ -1.84
PDLIM2-207ENST00000409417 MUC19Q7Z5P9 8384 aa3.25□□□□□ -1.89
PDLIM2-207ENST00000409417 KRTAP21-1Q3LI58 79 aa2.58□□□□□ -2
PDLIM2-207ENST00000409417 MUC16Q8WXI7 14507 aa2.3□□□□□ -2.04
Retrieved 77 of 20,778 RNA–protein pairs in 10.9 ms