RNA–Protein interactions for RNA: ENST00000409101.7

SCN3A-203, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN3A, Length 6,599 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-203ENST00000409101 MT1EP04732 61 aa1.65□□□□□ -2.14
SCN3A-203ENST00000409101 MT1LQ93083 61 aa1.65□□□□□ -2.15
SCN3A-203ENST00000409101 KRTAP6-3Q3LI67 103 aa1.62□□□□□ -2.15
SCN3A-203ENST00000409101 MT1MQ8N339 61 aa1.62□□□□□ -2.15
SCN3A-203ENST00000409101 SPRR5A0A1B0GTR4 108 aa1.62□□□□□ -2.15
SCN3A-203ENST00000409101 LCE3DQ9BYE3 92 aa1.62□□□□□ -2.15
SCN3A-203ENST00000409101 FAT4Q6V0I7 4981 aa1.61□□□□□ -2.15
SCN3A-203ENST00000409101 FLGP20930 4061 aaPredicted RBP1.61□□□□□ -2.15
SCN3A-203ENST00000409101 FSIP2Q5CZC0 6907 aa1.6□□□□□ -2.15
SCN3A-203ENST00000409101 KRTAP2-3P0C7H8 128 aa1.6□□□□□ -2.15
SCN3A-203ENST00000409101 KRTAP2-4Q9BYR9 128 aa1.6□□□□□ -2.15
SCN3A-203ENST00000409101 KRTAP4-7Q9BYR0 210 aa1.59□□□□□ -2.15
SCN3A-203ENST00000409101 MT3P25713 68 aa1.59□□□□□ -2.15
SCN3A-203ENST00000409101 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.59□□□□□ -2.16
SCN3A-203ENST00000409101 MUC2Q02817 5179 aa1.58□□□□□ -2.16
SCN3A-203ENST00000409101 LCE3EQ5T5B0 92 aa1.58□□□□□ -2.16
SCN3A-203ENST00000409101 SYNE2Q8WXH0 6885 aaKnown RBP1.54□□□□□ -2.16
SCN3A-203ENST00000409101 LCE1BQ5T7P3 118 aa1.53□□□□□ -2.16
SCN3A-203ENST00000409101 LCE1DQ5T752 114 aa1.53□□□□□ -2.16
SCN3A-203ENST00000409101 KRTAP4-3Q9BYR4 195 aa1.53□□□□□ -2.16
SCN3A-203ENST00000409101 LOC100996750A0A140TA64 210 aa1.53□□□□□ -2.16
SCN3A-203ENST00000409101 LCE1AQ5T7P2 110 aa1.52□□□□□ -2.17
SCN3A-203ENST00000409101 KRTAP2-2Q9BYT5 123 aa1.52□□□□□ -2.17
SCN3A-203ENST00000409101 KRTAP2-1Q9BYU5 128 aa1.52□□□□□ -2.17
SCN3A-203ENST00000409101 LCE4AQ5TA78 99 aa1.51□□□□□ -2.17
SCN3A-203ENST00000409101 MT1AP04731 61 aa1.5□□□□□ -2.17
SCN3A-203ENST00000409101 KRTAP4-9Q9BYQ8 210 aa1.48□□□□□ -2.17
SCN3A-203ENST00000409101 LCE5AQ5TCM9 118 aa1.48□□□□□ -2.17
SCN3A-203ENST00000409101 KRTAP19-7Q3SYF9 63 aa1.47□□□□□ -2.17
SCN3A-203ENST00000409101 USH2AO75445 5202 aa1.45□□□□□ -2.18
SCN3A-203ENST00000409101 SSPOA2VEC9 5147 aa1.45□□□□□ -2.18
SCN3A-203ENST00000409101 GPR98Q8WXG9 6306 aa1.43□□□□□ -2.18
SCN3A-203ENST00000409101 NEBP20929 6669 aa1.42□□□□□ -2.18
SCN3A-203ENST00000409101 KRTAP9-4Q9BYQ2 154 aa1.41□□□□□ -2.18
SCN3A-203ENST00000409101 PRM1P04553 51 aa1.4□□□□□ -2.19
SCN3A-203ENST00000409101 KRTAP6-2Q3LI66 62 aa1.39□□□□□ -2.19
SCN3A-203ENST00000409101 FCGBPQ9Y6R7 5405 aaPredicted RBP1.38□□□□□ -2.19
SCN3A-203ENST00000409101 KRTAP6-1Q3LI64 71 aa1.38□□□□□ -2.19
SCN3A-203ENST00000409101 KMT2DO14686 5537 aa1.36□□□□□ -2.19
SCN3A-203ENST00000409101 KRTAP4-6Q9BYQ5 205 aa1.36□□□□□ -2.19
SCN3A-203ENST00000409101 LCE1CQ5T751 118 aa1.35□□□□□ -2.19
SCN3A-203ENST00000409101 LCE1EQ5T753 118 aa1.35□□□□□ -2.19
SCN3A-203ENST00000409101 LCE1FQ5T754 118 aa1.35□□□□□ -2.19
SCN3A-203ENST00000409101 KRTAP9-9Q9BYP9 154 aa1.34□□□□□ -2.19
SCN3A-203ENST00000409101 MACF1Q9UPN3 7388 aaKnown RBP1.33□□□□□ -2.2
SCN3A-203ENST00000409101 KRTAP5-9P26371 169 aa1.31□□□□□ -2.2
SCN3A-203ENST00000409101 MDN1Q9NU22 5596 aa1.26□□□□□ -2.21
SCN3A-203ENST00000409101 KRTAP9-6A8MVA2 160 aa1.24□□□□□ -2.21
SCN3A-203ENST00000409101 KRTAP20-2Q3LI61 65 aa1.22□□□□□ -2.21
SCN3A-203ENST00000409101 KRTAP5-4Q6L8H1 288 aa1.19□□□□□ -2.22
SCN3A-203ENST00000409101 MUC12Q9UKN1 5478 aa1.18□□□□□ -2.22
SCN3A-203ENST00000409101 DSTQ03001 7570 aaKnown RBP1.17□□□□□ -2.22
SCN3A-203ENST00000409101 KRTAP5-2Q701N4 177 aa1.16□□□□□ -2.22
SCN3A-203ENST00000409101 OBSCNQ5VST9 7968 aa1.14□□□□□ -2.23
SCN3A-203ENST00000409101 AHNAK2Q8IVF2 5795 aa1.11□□□□□ -2.23
SCN3A-203ENST00000409101 KRTAP4-11Q9BYQ6 195 aa1.1□□□□□ -2.23
SCN3A-203ENST00000409101 HMCN1Q96RW7 5635 aa1.09□□□□□ -2.23
SCN3A-203ENST00000409101 KRTAP5-7Q6L8G8 165 aa1.09□□□□□ -2.24
SCN3A-203ENST00000409101 KRTAP4-12Q9BQ66 201 aa1.08□□□□□ -2.24
SCN3A-203ENST00000409101 KRTAP4-2Q9BYR5 136 aa1.08□□□□□ -2.24
SCN3A-203ENST00000409101 KRTAP5-3Q6L8H2 238 aa1.07□□□□□ -2.24
SCN3A-203ENST00000409101 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.06□□□□□ -2.24
SCN3A-203ENST00000409101 AHNAKQ09666 5890 aaKnown RBP1.06□□□□□ -2.24
SCN3A-203ENST00000409101 SYNE1Q8NF91 8797 aaKnown RBP1.06□□□□□ -2.24
SCN3A-203ENST00000409101 KRTAP5-10Q6L8G5 202 aa1.06□□□□□ -2.24
SCN3A-203ENST00000409101 KRTAP4-4Q9BYR3 166 aa1.04□□□□□ -2.24
SCN3A-203ENST00000409101 KRTAP5-5Q701N2 237 aaPredicted RBP1.02□□□□□ -2.25
SCN3A-203ENST00000409101 MUC5BQ9HC84 5762 aaPredicted RBP1.01□□□□□ -2.25
SCN3A-203ENST00000409101 MUC5ACP98088 5654 aa0.95□□□□□ -2.26
SCN3A-203ENST00000409101 KRTAP5-8O75690 187 aa0.94□□□□□ -2.26
SCN3A-203ENST00000409101 MUC19Q7Z5P9 8384 aa0.91□□□□□ -2.26
SCN3A-203ENST00000409101 PHGR1C9JFL3 82 aa0.89□□□□□ -2.27
SCN3A-203ENST00000409101 KRTAP5-11Q6L8G4 156 aa0.77□□□□□ -2.29
SCN3A-203ENST00000409101 KRTAP5-1Q6L8H4 278 aa0.76□□□□□ -2.29
SCN3A-203ENST00000409101 KRTAP21-2Q3LI59 83 aa0.68□□□□□ -2.3
SCN3A-203ENST00000409101 KRTAP21-1Q3LI58 79 aa0.64□□□□□ -2.31
SCN3A-203ENST00000409101 MUC16Q8WXI7 14507 aa0.48□□□□□ -2.33
Retrieved 77 of 20,778 RNA–protein pairs in 69 ms