RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 OBSCNQ5VST9 7968 aa3.36□□□□□ -1.87
MSH2-202ENST00000406134 LCE2DQ5TA82 110 aaPredicted RBP3.34□□□□□ -1.88
MSH2-202ENST00000406134 MUC12Q9UKN1 5478 aa3.34□□□□□ -1.88
MSH2-202ENST00000406134 DSTQ03001 7570 aaKnown RBP3.31□□□□□ -1.88
MSH2-202ENST00000406134 KRTAP9-6A0A140TA67 174 aa3.31□□□□□ -1.88
MSH2-202ENST00000406134 CRCT1Q9UGL9 99 aa3.31□□□□□ -1.88
MSH2-202ENST00000406134 KRTAP4-3Q9BYR4 195 aa3.29□□□□□ -1.88
MSH2-202ENST00000406134 KRTAP19-4Q3LI73 84 aa3.29□□□□□ -1.88
MSH2-202ENST00000406134 LOC100996750A0A140TA64 210 aa3.27□□□□□ -1.89
MSH2-202ENST00000406134 KRTAP9-2Q9BYQ4 174 aa3.25□□□□□ -1.89
MSH2-202ENST00000406134 MT1MQ8N339 61 aa3.2□□□□□ -1.9
MSH2-202ENST00000406134 SYNE1Q8NF91 8797 aaKnown RBP3.19□□□□□ -1.9
MSH2-202ENST00000406134 MT1GP13640 62 aa3.18□□□□□ -1.9
MSH2-202ENST00000406134 KRTAP19-3Q7Z4W3 81 aa3.18□□□□□ -1.9
MSH2-202ENST00000406134 LCE5AQ5TCM9 118 aa3.12□□□□□ -1.91
MSH2-202ENST00000406134 MACF1Q9UPN3 7388 aaKnown RBP3.11□□□□□ -1.91
MSH2-202ENST00000406134 SPRR2FQ96RM1 72 aa3.1□□□□□ -1.91
MSH2-202ENST00000406134 SYNE2Q8WXH0 6885 aaKnown RBP3.07□□□□□ -1.92
MSH2-202ENST00000406134 MDN1Q9NU22 5596 aa3.05□□□□□ -1.92
MSH2-202ENST00000406134 KRTAP12-4P60329 112 aa2.96□□□□□ -1.94
MSH2-202ENST00000406134 KRTAP6-1Q3LI64 71 aa2.93□□□□□ -1.94
MSH2-202ENST00000406134 KRTAP5-5Q701N2 237 aaPredicted RBP2.93□□□□□ -1.94
MSH2-202ENST00000406134 KRTAP4-9Q9BYQ8 210 aa2.92□□□□□ -1.94
MSH2-202ENST00000406134 KRTAP5-9P26371 169 aa2.91□□□□□ -1.94
MSH2-202ENST00000406134 LCE3BQ5TA77 95 aa2.91□□□□□ -1.94
MSH2-202ENST00000406134 LCE1AQ5T7P2 110 aa2.89□□□□□ -1.95
MSH2-202ENST00000406134 KRTAP9-7A8MTY7 169 aa2.89□□□□□ -1.95
MSH2-202ENST00000406134 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.88□□□□□ -1.95
MSH2-202ENST00000406134 MT1AP04731 61 aa2.85□□□□□ -1.95
MSH2-202ENST00000406134 SPRR2EP22531 72 aa2.82□□□□□ -1.96
MSH2-202ENST00000406134 SPRR2BP35325 72 aa2.82□□□□□ -1.96
MSH2-202ENST00000406134 SPRR2AP35326 72 aa2.82□□□□□ -1.96
MSH2-202ENST00000406134 KRTAP6-3Q3LI67 103 aa2.79□□□□□ -1.96
MSH2-202ENST00000406134 LCE3DQ9BYE3 92 aa2.7□□□□□ -1.98
MSH2-202ENST00000406134 KRTAP9-4Q9BYQ2 154 aa2.69□□□□□ -1.98
MSH2-202ENST00000406134 SPRR2DP22532 72 aa2.69□□□□□ -1.98
MSH2-202ENST00000406134 PRM1P04553 51 aa2.68□□□□□ -1.98
MSH2-202ENST00000406134 KRTAP2-2Q9BYT5 123 aa2.68□□□□□ -1.98
MSH2-202ENST00000406134 LCE3EQ5T5B0 92 aa2.66□□□□□ -1.98
MSH2-202ENST00000406134 LCE1EQ5T753 118 aa2.62□□□□□ -1.99
MSH2-202ENST00000406134 KRTAP6-2Q3LI66 62 aa2.6□□□□□ -1.99
MSH2-202ENST00000406134 KRTAP20-1Q3LI63 56 aa2.58□□□□□ -2
MSH2-202ENST00000406134 NEBP20929 6669 aa2.56□□□□□ -2
MSH2-202ENST00000406134 KRTAP5-4Q6L8H1 288 aa2.55□□□□□ -2
MSH2-202ENST00000406134 MT4P47944 62 aa2.53□□□□□ -2
MSH2-202ENST00000406134 MT3P25713 68 aa2.49□□□□□ -2.01
MSH2-202ENST00000406134 LCE1DQ5T752 114 aa2.48□□□□□ -2.01
MSH2-202ENST00000406134 KRTAP4-6Q9BYQ5 205 aa2.42□□□□□ -2.02
MSH2-202ENST00000406134 KRTAP5-2Q701N4 177 aa2.4□□□□□ -2.03
MSH2-202ENST00000406134 MUC19Q7Z5P9 8384 aa2.37□□□□□ -2.03
MSH2-202ENST00000406134 HMCN1Q96RW7 5635 aa2.35□□□□□ -2.03
MSH2-202ENST00000406134 KRTAP20-2Q3LI61 65 aa2.35□□□□□ -2.03
MSH2-202ENST00000406134 KRTAP5-3Q6L8H2 238 aa2.29□□□□□ -2.04
MSH2-202ENST00000406134 LCE1FQ5T754 118 aa2.27□□□□□ -2.05
MSH2-202ENST00000406134 MUC5ACP98088 5654 aa2.26□□□□□ -2.05
MSH2-202ENST00000406134 LCE4AQ5TA78 99 aa2.26□□□□□ -2.05
MSH2-202ENST00000406134 LCE1BQ5T7P3 118 aa2.22□□□□□ -2.05
MSH2-202ENST00000406134 KRTAP5-7Q6L8G8 165 aa2.22□□□□□ -2.05
MSH2-202ENST00000406134 GPR98Q8WXG9 6306 aa2.16□□□□□ -2.06
MSH2-202ENST00000406134 KRTAP5-10Q6L8G5 202 aa2.12□□□□□ -2.07
MSH2-202ENST00000406134 KRTAP5-1Q6L8H4 278 aa2.1□□□□□ -2.07
MSH2-202ENST00000406134 KRTAP4-2Q9BYR5 136 aa2.05□□□□□ -2.08
MSH2-202ENST00000406134 MUC5BQ9HC84 5762 aaPredicted RBP2.05□□□□□ -2.08
MSH2-202ENST00000406134 AHNAKQ09666 5890 aaKnown RBP2.02□□□□□ -2.09
MSH2-202ENST00000406134 KRTAP4-11Q9BYQ6 195 aa2.01□□□□□ -2.09
MSH2-202ENST00000406134 LCE1CQ5T751 118 aa2□□□□□ -2.09
MSH2-202ENST00000406134 AHNAK2Q8IVF2 5795 aa2□□□□□ -2.09
MSH2-202ENST00000406134 KRTAP21-2Q3LI59 83 aa1.93□□□□□ -2.1
MSH2-202ENST00000406134 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.93□□□□□ -2.1
MSH2-202ENST00000406134 KRTAP5-8O75690 187 aa1.89□□□□□ -2.11
MSH2-202ENST00000406134 KRTAP9-9Q9BYP9 154 aa1.86□□□□□ -2.11
MSH2-202ENST00000406134 KRTAP4-12Q9BQ66 201 aa1.83□□□□□ -2.12
MSH2-202ENST00000406134 KRTAP4-4Q9BYR3 166 aa1.8□□□□□ -2.12
MSH2-202ENST00000406134 KRTAP5-11Q6L8G4 156 aa1.72□□□□□ -2.13
MSH2-202ENST00000406134 KRTAP21-1Q3LI58 79 aa1.68□□□□□ -2.14
MSH2-202ENST00000406134 PHGR1C9JFL3 82 aa1.5□□□□□ -2.17
MSH2-202ENST00000406134 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 6.1 ms