RNA–Protein interactions for RNA: ENST00000400186.7

CSMD1-202, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 10,938 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-202ENST00000400186 KRTAP19-6Q3LI70 58 aa2.73□□□□□ -1.97
CSMD1-202ENST00000400186 MT1AP04731 61 aa2.73□□□□□ -1.97
CSMD1-202ENST00000400186 LPAP08519 4548 aa2.71□□□□□ -1.98
CSMD1-202ENST00000400186 KRTAP19-7Q3SYF9 63 aa2.67□□□□□ -1.98
CSMD1-202ENST00000400186 HERC2O95714 4834 aa2.66□□□□□ -1.98
CSMD1-202ENST00000400186 LCE5AQ5TCM9 118 aa2.65□□□□□ -1.98
CSMD1-202ENST00000400186 KRTAP9-2Q9BYQ4 174 aa2.64□□□□□ -1.99
CSMD1-202ENST00000400186 RYR2Q92736 4967 aa2.63□□□□□ -1.99
CSMD1-202ENST00000400186 KRTAP6-2Q3LI66 62 aa2.63□□□□□ -1.99
CSMD1-202ENST00000400186 HYDINQ4G0P3 5121 aa2.63□□□□□ -1.99
CSMD1-202ENST00000400186 BIRC6Q9NR09 4857 aa2.63□□□□□ -1.99
CSMD1-202ENST00000400186 HERC1Q15751 4861 aa2.61□□□□□ -1.99
CSMD1-202ENST00000400186 KIAA1109Q2LD37 5005 aa2.6□□□□□ -1.99
CSMD1-202ENST00000400186 KRTAP6-1Q3LI64 71 aa2.56□□□□□ -2
CSMD1-202ENST00000400186 KRTAP9-6A8MVA2 160 aa2.52□□□□□ -2.01
CSMD1-202ENST00000400186 EPPK1P58107 5090 aaKnown RBP2.51□□□□□ -2.01
CSMD1-202ENST00000400186 SYNE2Q8WXH0 6885 aaKnown RBP2.51□□□□□ -2.01
CSMD1-202ENST00000400186 KRTAP20-1Q3LI63 56 aa2.51□□□□□ -2.01
CSMD1-202ENST00000400186 LCE1CQ5T751 118 aa2.5□□□□□ -2.01
CSMD1-202ENST00000400186 LCE1EQ5T753 118 aa2.5□□□□□ -2.01
CSMD1-202ENST00000400186 LCE1FQ5T754 118 aa2.5□□□□□ -2.01
CSMD1-202ENST00000400186 LCE1AQ5T7P2 110 aa2.5□□□□□ -2.01
CSMD1-202ENST00000400186 KRTAP9-7A8MTY7 169 aa2.5□□□□□ -2.01
CSMD1-202ENST00000400186 KRTAP9-4Q9BYQ2 154 aa2.48□□□□□ -2.01
CSMD1-202ENST00000400186 KRTAP9-6A0A140TA67 174 aa2.44□□□□□ -2.02
CSMD1-202ENST00000400186 LCE2AQ5TA79 106 aaPredicted RBP2.43□□□□□ -2.02
CSMD1-202ENST00000400186 LCE4AQ5TA78 99 aa2.41□□□□□ -2.02
CSMD1-202ENST00000400186 RNF213Q63HN8 5207 aa2.38□□□□□ -2.03
CSMD1-202ENST00000400186 KRTAP2-2Q9BYT5 123 aa2.38□□□□□ -2.03
CSMD1-202ENST00000400186 SYNE1Q8NF91 8797 aaKnown RBP2.37□□□□□ -2.03
CSMD1-202ENST00000400186 KRTAP6-3Q3LI67 103 aa2.35□□□□□ -2.03
CSMD1-202ENST00000400186 MUC2Q02817 5179 aa2.33□□□□□ -2.04
CSMD1-202ENST00000400186 ABCA13Q86UQ4 5058 aa2.33□□□□□ -2.04
CSMD1-202ENST00000400186 UBR4Q5T4S7 5183 aa2.29□□□□□ -2.04
CSMD1-202ENST00000400186 HMCN2Q8NDA2 5059 aa2.28□□□□□ -2.04
CSMD1-202ENST00000400186 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.27□□□□□ -2.05
CSMD1-202ENST00000400186 FAT4Q6V0I7 4981 aa2.25□□□□□ -2.05
CSMD1-202ENST00000400186 FSIP2Q5CZC0 6907 aa2.24□□□□□ -2.05
CSMD1-202ENST00000400186 KRTAP9-9Q9BYP9 154 aa2.22□□□□□ -2.05
CSMD1-202ENST00000400186 KRTAP4-11Q9BYQ6 195 aa2.19□□□□□ -2.06
CSMD1-202ENST00000400186 USH2AO75445 5202 aa2.03□□□□□ -2.08
CSMD1-202ENST00000400186 KRTAP4-6Q9BYQ5 205 aa2.02□□□□□ -2.09
CSMD1-202ENST00000400186 KMT2DO14686 5537 aa2.02□□□□□ -2.09
CSMD1-202ENST00000400186 KRTAP4-4Q9BYR3 166 aa2□□□□□ -2.09
CSMD1-202ENST00000400186 KRTAP20-2Q3LI61 65 aa2□□□□□ -2.09
CSMD1-202ENST00000400186 FCGBPQ9Y6R7 5405 aaPredicted RBP1.95□□□□□ -2.1
CSMD1-202ENST00000400186 KRTAP5-9P26371 169 aa1.95□□□□□ -2.1
CSMD1-202ENST00000400186 OBSCNQ5VST9 7968 aa1.92□□□□□ -2.1
CSMD1-202ENST00000400186 KRTAP5-5Q701N2 237 aaPredicted RBP1.92□□□□□ -2.1
CSMD1-202ENST00000400186 KRTAP4-12Q9BQ66 201 aa1.91□□□□□ -2.1
CSMD1-202ENST00000400186 KRTAP4-2Q9BYR5 136 aa1.91□□□□□ -2.1
CSMD1-202ENST00000400186 NEBP20929 6669 aa1.89□□□□□ -2.11
CSMD1-202ENST00000400186 MDN1Q9NU22 5596 aa1.87□□□□□ -2.11
CSMD1-202ENST00000400186 KRTAP5-4Q6L8H1 288 aa1.84□□□□□ -2.11
CSMD1-202ENST00000400186 DSTQ03001 7570 aaKnown RBP1.8□□□□□ -2.12
CSMD1-202ENST00000400186 MUC12Q9UKN1 5478 aa1.77□□□□□ -2.13
CSMD1-202ENST00000400186 SSPOA2VEC9 5147 aa1.75□□□□□ -2.13
CSMD1-202ENST00000400186 GPR98Q8WXG9 6306 aa1.72□□□□□ -2.13
CSMD1-202ENST00000400186 MACF1Q9UPN3 7388 aaKnown RBP1.7□□□□□ -2.14
CSMD1-202ENST00000400186 MUC19Q7Z5P9 8384 aa1.59□□□□□ -2.16
CSMD1-202ENST00000400186 KRTAP5-3Q6L8H2 238 aa1.59□□□□□ -2.16
CSMD1-202ENST00000400186 MUC5ACP98088 5654 aa1.55□□□□□ -2.16
CSMD1-202ENST00000400186 KRTAP5-10Q6L8G5 202 aa1.49□□□□□ -2.17
CSMD1-202ENST00000400186 HMCN1Q96RW7 5635 aa1.47□□□□□ -2.17
CSMD1-202ENST00000400186 MUC5BQ9HC84 5762 aaPredicted RBP1.45□□□□□ -2.18
CSMD1-202ENST00000400186 KRTAP5-8O75690 187 aa1.4□□□□□ -2.18
CSMD1-202ENST00000400186 PHGR1C9JFL3 82 aa1.39□□□□□ -2.19
CSMD1-202ENST00000400186 KRTAP5-2Q701N4 177 aa1.38□□□□□ -2.19
CSMD1-202ENST00000400186 KRTAP5-1Q6L8H4 278 aa1.32□□□□□ -2.2
CSMD1-202ENST00000400186 AHNAK2Q8IVF2 5795 aa1.31□□□□□ -2.2
CSMD1-202ENST00000400186 AHNAKQ09666 5890 aaKnown RBP1.29□□□□□ -2.2
CSMD1-202ENST00000400186 KRTAP5-11Q6L8G4 156 aa1.28□□□□□ -2.2
CSMD1-202ENST00000400186 KRTAP21-2Q3LI59 83 aa1.23□□□□□ -2.21
CSMD1-202ENST00000400186 KRTAP21-1Q3LI58 79 aa1.18□□□□□ -2.22
CSMD1-202ENST00000400186 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.08□□□□□ -2.24
CSMD1-202ENST00000400186 KRTAP5-7Q6L8G8 165 aa0.96□□□□□ -2.26
CSMD1-202ENST00000400186 MUC16Q8WXI7 14507 aa0.84□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 11.2 ms