RNA–Protein interactions for RNA: ENST00000400186.7

CSMD1-202, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 10,938 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-202ENST00000400186 QKIQ96PU8 341 aaKnown RBP eCLIP9.86□□□□□ -0.837e-33■■■■■ 356
CSMD1-202ENST00000400186 SF3B1O75533 1304 aaKnown RBP eCLIP9.88□□□□□ -0.831e-7■■■■■ 172.3
CSMD1-202ENST00000400186 AGGF1Q8N302 714 aaeCLIP10.15□□□□□ -0.782e-8■■■■■ 37.2
CSMD1-202ENST00000400186 DKC1O60832 514 aaKnown RBP eCLIP10.55□□□□□ -0.722e-6■■■■■ 36
CSMD1-202ENST00000400186 AQRO60306 1485 aaKnown RBP eCLIP10.97□□□□□ -0.653e-7■■■■■ 34.7
CSMD1-202ENST00000400186 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.34□□□□□ -0.592e-6■■■■■ 29.1
CSMD1-202ENST00000400186 HNRNPLP14866 589 aaKnown RBP eCLIP9.64□□□□□ -0.872e-7■■■■□ 19.3
CSMD1-202ENST00000400186 PTBP1P26599 531 aaKnown RBP eCLIP8.88□□□□□ -0.992e-7■■■□□ 17
CSMD1-202ENST00000400186 SF3B4Q15427 424 aaKnown RBP eCLIP8.95□□□□□ -0.986e-6■■□□□ 11.8
CSMD1-202ENST00000400186 ZNF622Q969S3 477 aaKnown RBP eCLIP10.7□□□□□ -0.76e-7■■□□□ 11.7
CSMD1-202ENST00000400186 YBX3P16989 372 aaKnown RBP eCLIP9.69□□□□□ -0.864e-6■□□□□ 11.2
CSMD1-202ENST00000400186 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.23□□□□□ -0.771e-7■□□□□ 9.3
Retrieved 12 of 12 RNA–protein pairs in 21.6 ms