RNA–Protein interactions for RNA: ENST00000396352.8

HOXA3-202, Transcript of homeobox A3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA3, Length 3,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3-202ENST00000396352 KRTAP9-4Q9BYQ2 154 aa5.38□□□□□ -1.55
HOXA3-202ENST00000396352 KRTAP9-6A0A140TA67 174 aa5.31□□□□□ -1.56
HOXA3-202ENST00000396352 KRTAP9-7A8MTY7 169 aa5.31□□□□□ -1.56
HOXA3-202ENST00000396352 KRTAP9-9Q9BYP9 154 aa5.28□□□□□ -1.56
HOXA3-202ENST00000396352 KRTAP19-6Q3LI70 58 aa5.24□□□□□ -1.57
HOXA3-202ENST00000396352 FSIP2Q5CZC0 6907 aa5.24□□□□□ -1.57
HOXA3-202ENST00000396352 LCE5AQ5TCM9 118 aa5.24□□□□□ -1.57
HOXA3-202ENST00000396352 KRTAP4-3Q9BYR4 195 aa5.13□□□□□ -1.59
HOXA3-202ENST00000396352 LOC100996750A0A140TA64 210 aa5.13□□□□□ -1.59
HOXA3-202ENST00000396352 FCGBPQ9Y6R7 5405 aaPredicted RBP5.09□□□□□ -1.59
HOXA3-202ENST00000396352 MT1GP13640 62 aa5.06□□□□□ -1.6
HOXA3-202ENST00000396352 MT1MQ8N339 61 aa5.05□□□□□ -1.6
HOXA3-202ENST00000396352 KRTAP19-3Q7Z4W3 81 aa5.03□□□□□ -1.6
HOXA3-202ENST00000396352 MUC12Q9UKN1 5478 aa5.03□□□□□ -1.6
HOXA3-202ENST00000396352 DSTQ03001 7570 aaKnown RBP4.99□□□□□ -1.61
HOXA3-202ENST00000396352 CRCT1Q9UGL9 99 aa4.91□□□□□ -1.62
HOXA3-202ENST00000396352 KRTAP9-2Q9BYQ4 174 aa4.87□□□□□ -1.63
HOXA3-202ENST00000396352 SPRR2FQ96RM1 72 aa4.78□□□□□ -1.64
HOXA3-202ENST00000396352 KRTAP12-4P60329 112 aa4.78□□□□□ -1.64
HOXA3-202ENST00000396352 LCE1FQ5T754 118 aa4.77□□□□□ -1.65
HOXA3-202ENST00000396352 SYNE1Q8NF91 8797 aaKnown RBP4.71□□□□□ -1.66
HOXA3-202ENST00000396352 LCE3BQ5TA77 95 aa4.69□□□□□ -1.66
HOXA3-202ENST00000396352 MACF1Q9UPN3 7388 aaKnown RBP4.66□□□□□ -1.66
HOXA3-202ENST00000396352 KRTAP4-9Q9BYQ8 210 aa4.63□□□□□ -1.67
HOXA3-202ENST00000396352 KRTAP6-1Q3LI64 71 aa4.61□□□□□ -1.67
HOXA3-202ENST00000396352 MT1AP04731 61 aa4.59□□□□□ -1.67
HOXA3-202ENST00000396352 SYNE2Q8WXH0 6885 aaKnown RBP4.53□□□□□ -1.68
HOXA3-202ENST00000396352 MDN1Q9NU22 5596 aa4.52□□□□□ -1.69
HOXA3-202ENST00000396352 LCE1AQ5T7P2 110 aa4.52□□□□□ -1.69
HOXA3-202ENST00000396352 KRTAP4-12Q9BQ66 201 aa4.52□□□□□ -1.69
HOXA3-202ENST00000396352 KRTAP5-5Q701N2 237 aaPredicted RBP4.48□□□□□ -1.69
HOXA3-202ENST00000396352 KRTAP5-9P26371 169 aa4.48□□□□□ -1.69
HOXA3-202ENST00000396352 OBSCNQ5VST9 7968 aa4.46□□□□□ -1.7
HOXA3-202ENST00000396352 LCE3DQ9BYE3 92 aa4.44□□□□□ -1.7
HOXA3-202ENST00000396352 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.42□□□□□ -1.7
HOXA3-202ENST00000396352 KRTAP4-6Q9BYQ5 205 aa4.41□□□□□ -1.7
HOXA3-202ENST00000396352 LCE3EQ5T5B0 92 aa4.39□□□□□ -1.71
HOXA3-202ENST00000396352 SPRR2EP22531 72 aa4.32□□□□□ -1.72
HOXA3-202ENST00000396352 SPRR2BP35325 72 aa4.32□□□□□ -1.72
HOXA3-202ENST00000396352 SPRR2AP35326 72 aa4.32□□□□□ -1.72
HOXA3-202ENST00000396352 KRTAP6-3Q3LI67 103 aa4.29□□□□□ -1.72
HOXA3-202ENST00000396352 PRM1P04553 51 aa4.25□□□□□ -1.73
HOXA3-202ENST00000396352 KRTAP2-2Q9BYT5 123 aa4.23□□□□□ -1.73
HOXA3-202ENST00000396352 SPRR2DP22532 72 aa4.12□□□□□ -1.75
HOXA3-202ENST00000396352 KRTAP6-2Q3LI66 62 aa4.12□□□□□ -1.75
HOXA3-202ENST00000396352 MT3P25713 68 aa4.09□□□□□ -1.75
HOXA3-202ENST00000396352 LCE1EQ5T753 118 aa4.05□□□□□ -1.76
HOXA3-202ENST00000396352 NEBP20929 6669 aa4.01□□□□□ -1.77
HOXA3-202ENST00000396352 KRTAP5-4Q6L8H1 288 aa3.89□□□□□ -1.79
HOXA3-202ENST00000396352 LCE1DQ5T752 114 aa3.88□□□□□ -1.79
HOXA3-202ENST00000396352 KRTAP4-11Q9BYQ6 195 aa3.72□□□□□ -1.81
HOXA3-202ENST00000396352 KRTAP5-2Q701N4 177 aa3.66□□□□□ -1.82
HOXA3-202ENST00000396352 MT4P47944 62 aa3.64□□□□□ -1.83
HOXA3-202ENST00000396352 KRTAP20-1Q3LI63 56 aa3.64□□□□□ -1.83
HOXA3-202ENST00000396352 KRTAP20-2Q3LI61 65 aa3.63□□□□□ -1.83
HOXA3-202ENST00000396352 HMCN1Q96RW7 5635 aa3.51□□□□□ -1.85
HOXA3-202ENST00000396352 MUC5ACP98088 5654 aa3.47□□□□□ -1.85
HOXA3-202ENST00000396352 KRTAP5-3Q6L8H2 238 aa3.47□□□□□ -1.85
HOXA3-202ENST00000396352 KRTAP4-2Q9BYR5 136 aa3.45□□□□□ -1.86
HOXA3-202ENST00000396352 MUC19Q7Z5P9 8384 aa3.3□□□□□ -1.88
HOXA3-202ENST00000396352 KRTAP5-10Q6L8G5 202 aa3.27□□□□□ -1.89
HOXA3-202ENST00000396352 LCE1BQ5T7P3 118 aa3.25□□□□□ -1.89
HOXA3-202ENST00000396352 KRTAP5-1Q6L8H4 278 aa3.24□□□□□ -1.89
HOXA3-202ENST00000396352 LCE1CQ5T751 118 aa3.14□□□□□ -1.91
HOXA3-202ENST00000396352 AHNAK2Q8IVF2 5795 aa3.07□□□□□ -1.92
HOXA3-202ENST00000396352 KRTAP21-2Q3LI59 83 aa2.99□□□□□ -1.93
HOXA3-202ENST00000396352 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.98□□□□□ -1.93
HOXA3-202ENST00000396352 KRTAP5-8O75690 187 aa2.89□□□□□ -1.95
HOXA3-202ENST00000396352 KRTAP5-7Q6L8G8 165 aa2.89□□□□□ -1.95
HOXA3-202ENST00000396352 GPR98Q8WXG9 6306 aa2.86□□□□□ -1.95
HOXA3-202ENST00000396352 KRTAP4-4Q9BYR3 166 aa2.75□□□□□ -1.97
HOXA3-202ENST00000396352 KRTAP21-1Q3LI58 79 aa2.7□□□□□ -1.98
HOXA3-202ENST00000396352 KRTAP5-11Q6L8G4 156 aa2.69□□□□□ -1.98
HOXA3-202ENST00000396352 MUC5BQ9HC84 5762 aaPredicted RBP2.6□□□□□ -1.99
HOXA3-202ENST00000396352 AHNAKQ09666 5890 aaKnown RBP2.34□□□□□ -2.03
HOXA3-202ENST00000396352 PHGR1C9JFL3 82 aa2.33□□□□□ -2.04
HOXA3-202ENST00000396352 MUC16Q8WXI7 14507 aa1.55□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 11.4 ms