RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 KRTAP8-1Q8IUC2 63 aa2.16□□□□□ -2.06
VPS41-203ENST00000395969 KRTAP19-6Q3LI70 58 aa2.14□□□□□ -2.07
VPS41-203ENST00000395969 M0R2T5 61 aa2.13□□□□□ -2.07
VPS41-203ENST00000395969 LCE1AQ5T7P2 110 aa2.13□□□□□ -2.07
VPS41-203ENST00000395969 LCE3CQ5T5A8 94 aa2.11□□□□□ -2.07
VPS41-203ENST00000395969 LCE3AQ5TA76 89 aa2.11□□□□□ -2.07
VPS41-203ENST00000395969 KRTAP2-2Q9BYT5 123 aa2.1□□□□□ -2.07
VPS41-203ENST00000395969 KRTAP10-7P60409 375 aaPredicted RBP2.02□□□□□ -2.09
VPS41-203ENST00000395969 SSPOA2VEC9 5147 aa2.01□□□□□ -2.09
VPS41-203ENST00000395969 KRTAP12-3P60328 96 aa1.99□□□□□ -2.09
VPS41-203ENST00000395969 LCE1EQ5T753 118 aa1.99□□□□□ -2.09
VPS41-203ENST00000395969 USH2AO75445 5202 aa1.99□□□□□ -2.09
VPS41-203ENST00000395969 KRTAP19-7Q3SYF9 63 aa1.97□□□□□ -2.09
VPS41-203ENST00000395969 LCE3EQ5T5B0 92 aa1.96□□□□□ -2.1
VPS41-203ENST00000395969 KMT2DO14686 5537 aa1.96□□□□□ -2.1
VPS41-203ENST00000395969 MT1EP04732 61 aa1.93□□□□□ -2.1
VPS41-203ENST00000395969 KRTAP5-9P26371 169 aa1.92□□□□□ -2.1
VPS41-203ENST00000395969 KRTAP19-5Q3LI72 72 aa1.92□□□□□ -2.1
VPS41-203ENST00000395969 OBSCNQ5VST9 7968 aa1.91□□□□□ -2.1
VPS41-203ENST00000395969 KRTAP2-3P0C7H8 128 aa1.9□□□□□ -2.11
VPS41-203ENST00000395969 MT1LQ93083 61 aa1.9□□□□□ -2.11
VPS41-203ENST00000395969 KRTAP2-4Q9BYR9 128 aa1.9□□□□□ -2.11
VPS41-203ENST00000395969 KRTAP2-1Q9BYU5 128 aa1.9□□□□□ -2.11
VPS41-203ENST00000395969 MT3P25713 68 aa1.87□□□□□ -2.11
VPS41-203ENST00000395969 KRTAP9-6A8MVA2 160 aa1.87□□□□□ -2.11
VPS41-203ENST00000395969 CRCT1Q9UGL9 99 aa1.86□□□□□ -2.11
VPS41-203ENST00000395969 MT1GP13640 62 aa1.85□□□□□ -2.11
VPS41-203ENST00000395969 SYNE1Q8NF91 8797 aaKnown RBP1.85□□□□□ -2.11
VPS41-203ENST00000395969 KRTAP19-3Q7Z4W3 81 aa1.83□□□□□ -2.12
VPS41-203ENST00000395969 LCE3DQ9BYE3 92 aa1.81□□□□□ -2.12
VPS41-203ENST00000395969 FCGBPQ9Y6R7 5405 aaPredicted RBP1.8□□□□□ -2.12
VPS41-203ENST00000395969 KRTAP6-3Q3LI67 103 aa1.8□□□□□ -2.12
VPS41-203ENST00000395969 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.8□□□□□ -2.12
VPS41-203ENST00000395969 MT1MQ8N339 61 aa1.8□□□□□ -2.12
VPS41-203ENST00000395969 DSTQ03001 7570 aaKnown RBP1.79□□□□□ -2.12
VPS41-203ENST00000395969 KRTAP12-4P60329 112 aa1.75□□□□□ -2.13
VPS41-203ENST00000395969 KRTAP5-5Q701N2 237 aaPredicted RBP1.75□□□□□ -2.13
VPS41-203ENST00000395969 HMCN1Q96RW7 5635 aa1.71□□□□□ -2.14
VPS41-203ENST00000395969 FSIP2Q5CZC0 6907 aa1.71□□□□□ -2.14
VPS41-203ENST00000395969 KRTAP20-1Q3LI63 56 aa1.7□□□□□ -2.14
VPS41-203ENST00000395969 KRTAP5-11Q6L8G4 156 aa1.69□□□□□ -2.14
VPS41-203ENST00000395969 GPR98Q8WXG9 6306 aa1.68□□□□□ -2.14
VPS41-203ENST00000395969 MUC5BQ9HC84 5762 aaPredicted RBP1.68□□□□□ -2.14
VPS41-203ENST00000395969 KRTAP5-4Q6L8H1 288 aa1.66□□□□□ -2.14
VPS41-203ENST00000395969 MT1AP04731 61 aa1.66□□□□□ -2.14
VPS41-203ENST00000395969 SPRR2FQ96RM1 72 aa1.66□□□□□ -2.14
VPS41-203ENST00000395969 KRTAP4-3Q9BYR4 195 aa1.63□□□□□ -2.15
VPS41-203ENST00000395969 MUC12Q9UKN1 5478 aa1.63□□□□□ -2.15
VPS41-203ENST00000395969 PRM1P04553 51 aa1.6□□□□□ -2.15
VPS41-203ENST00000395969 SPRR2EP22531 72 aa1.59□□□□□ -2.15
VPS41-203ENST00000395969 SPRR2BP35325 72 aa1.59□□□□□ -2.15
VPS41-203ENST00000395969 SPRR2AP35326 72 aa1.59□□□□□ -2.15
VPS41-203ENST00000395969 MACF1Q9UPN3 7388 aaKnown RBP1.58□□□□□ -2.16
VPS41-203ENST00000395969 SYNE2Q8WXH0 6885 aaKnown RBP1.57□□□□□ -2.16
VPS41-203ENST00000395969 MUC19Q7Z5P9 8384 aa1.57□□□□□ -2.16
VPS41-203ENST00000395969 KRTAP5-7Q6L8G8 165 aa1.57□□□□□ -2.16
VPS41-203ENST00000395969 AHNAKQ09666 5890 aaKnown RBP1.56□□□□□ -2.16
VPS41-203ENST00000395969 NEBP20929 6669 aa1.56□□□□□ -2.16
VPS41-203ENST00000395969 SPRR2DP22532 72 aa1.55□□□□□ -2.16
VPS41-203ENST00000395969 KRTAP5-2Q701N4 177 aa1.54□□□□□ -2.16
VPS41-203ENST00000395969 KRTAP6-1Q3LI64 71 aa1.53□□□□□ -2.16
VPS41-203ENST00000395969 KRTAP5-1Q6L8H4 278 aa1.49□□□□□ -2.17
VPS41-203ENST00000395969 KRTAP6-2Q3LI66 62 aa1.43□□□□□ -2.18
VPS41-203ENST00000395969 KRTAP20-2Q3LI61 65 aa1.42□□□□□ -2.18
VPS41-203ENST00000395969 MDN1Q9NU22 5596 aa1.41□□□□□ -2.18
VPS41-203ENST00000395969 KRTAP4-4Q9BYR3 166 aa1.41□□□□□ -2.18
VPS41-203ENST00000395969 KRTAP5-10Q6L8G5 202 aa1.39□□□□□ -2.19
VPS41-203ENST00000395969 AHNAK2Q8IVF2 5795 aa1.33□□□□□ -2.2
VPS41-203ENST00000395969 KRTAP5-8O75690 187 aa1.31□□□□□ -2.2
VPS41-203ENST00000395969 LCE1CQ5T751 118 aa1.27□□□□□ -2.21
VPS41-203ENST00000395969 LCE1BQ5T7P3 118 aa1.27□□□□□ -2.21
VPS41-203ENST00000395969 MT4P47944 62 aa1.22□□□□□ -2.21
VPS41-203ENST00000395969 MUC5ACP98088 5654 aa1.17□□□□□ -2.22
VPS41-203ENST00000395969 KRTAP21-2Q3LI59 83 aa1.09□□□□□ -2.24
VPS41-203ENST00000395969 KRTAP21-1Q3LI58 79 aa1.01□□□□□ -2.25
VPS41-203ENST00000395969 PHGR1C9JFL3 82 aa0.94□□□□□ -2.26
VPS41-203ENST00000395969 MUC16Q8WXI7 14507 aa0.68□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 204.6 ms