RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 KRTAP4-3Q9BYR4 195 aa6.9□□□□□ -1.31
CLK3-202ENST00000395066 MUC12Q9UKN1 5478 aa6.88□□□□□ -1.31
CLK3-202ENST00000395066 LOC100996750A0A140TA64 210 aa6.87□□□□□ -1.31
CLK3-202ENST00000395066 KRTAP19-6Q3LI70 58 aa6.86□□□□□ -1.31
CLK3-202ENST00000395066 LCE2DQ5TA82 110 aaPredicted RBP6.77□□□□□ -1.33
CLK3-202ENST00000395066 MT1GP13640 62 aa6.75□□□□□ -1.33
CLK3-202ENST00000395066 CRCT1Q9UGL9 99 aa6.7□□□□□ -1.34
CLK3-202ENST00000395066 DSTQ03001 7570 aaKnown RBP6.69□□□□□ -1.34
CLK3-202ENST00000395066 MT1MQ8N339 61 aa6.63□□□□□ -1.35
CLK3-202ENST00000395066 KRTAP19-3Q7Z4W3 81 aa6.6□□□□□ -1.35
CLK3-202ENST00000395066 SPRR2FQ96RM1 72 aa6.43□□□□□ -1.38
CLK3-202ENST00000395066 MACF1Q9UPN3 7388 aaKnown RBP6.41□□□□□ -1.38
CLK3-202ENST00000395066 KRTAP12-4P60329 112 aa6.38□□□□□ -1.39
CLK3-202ENST00000395066 LCE5AQ5TCM9 118 aa6.36□□□□□ -1.39
CLK3-202ENST00000395066 LCE3BQ5TA77 95 aa6.27□□□□□ -1.41
CLK3-202ENST00000395066 SYNE2Q8WXH0 6885 aaKnown RBP6.25□□□□□ -1.41
CLK3-202ENST00000395066 SYNE1Q8NF91 8797 aaKnown RBP6.24□□□□□ -1.41
CLK3-202ENST00000395066 KRTAP4-9Q9BYQ8 210 aa6.23□□□□□ -1.41
CLK3-202ENST00000395066 MDN1Q9NU22 5596 aa6.19□□□□□ -1.42
CLK3-202ENST00000395066 KRTAP6-1Q3LI64 71 aa6.1□□□□□ -1.43
CLK3-202ENST00000395066 MT1AP04731 61 aa5.98□□□□□ -1.45
CLK3-202ENST00000395066 LCE1AQ5T7P2 110 aa5.93□□□□□ -1.46
CLK3-202ENST00000395066 KRTAP9-2Q9BYQ4 174 aa5.91□□□□□ -1.46
CLK3-202ENST00000395066 LCE3DQ9BYE3 92 aa5.85□□□□□ -1.47
CLK3-202ENST00000395066 KRTAP5-5Q701N2 237 aaPredicted RBP5.81□□□□□ -1.48
CLK3-202ENST00000395066 LCE3EQ5T5B0 92 aa5.79□□□□□ -1.48
CLK3-202ENST00000395066 SPRR2EP22531 72 aa5.79□□□□□ -1.48
CLK3-202ENST00000395066 SPRR2BP35325 72 aa5.79□□□□□ -1.48
CLK3-202ENST00000395066 SPRR2AP35326 72 aa5.79□□□□□ -1.48
CLK3-202ENST00000395066 KRTAP5-9P26371 169 aa5.78□□□□□ -1.48
CLK3-202ENST00000395066 OBSCNQ5VST9 7968 aa5.75□□□□□ -1.49
CLK3-202ENST00000395066 KRTAP9-7A8MTY7 169 aa5.72□□□□□ -1.49
CLK3-202ENST00000395066 PRM1P04553 51 aa5.68□□□□□ -1.5
CLK3-202ENST00000395066 KRTAP9-4Q9BYQ2 154 aa5.57□□□□□ -1.52
CLK3-202ENST00000395066 KRTAP9-6A0A140TA67 174 aa5.53□□□□□ -1.52
CLK3-202ENST00000395066 SPRR2DP22532 72 aa5.52□□□□□ -1.53
CLK3-202ENST00000395066 KRTAP6-2Q3LI66 62 aa5.46□□□□□ -1.54
CLK3-202ENST00000395066 MT3P25713 68 aa5.29□□□□□ -1.56
CLK3-202ENST00000395066 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.25□□□□□ -1.57
CLK3-202ENST00000395066 KRTAP6-3Q3LI67 103 aa5.21□□□□□ -1.58
CLK3-202ENST00000395066 KRTAP4-6Q9BYQ5 205 aa5.03□□□□□ -1.6
CLK3-202ENST00000395066 KRTAP2-2Q9BYT5 123 aa5.03□□□□□ -1.6
CLK3-202ENST00000395066 KRTAP5-4Q6L8H1 288 aa5.02□□□□□ -1.61
CLK3-202ENST00000395066 MT4P47944 62 aa4.98□□□□□ -1.61
CLK3-202ENST00000395066 NEBP20929 6669 aa4.94□□□□□ -1.62
CLK3-202ENST00000395066 KRTAP20-2Q3LI61 65 aa4.79□□□□□ -1.64
CLK3-202ENST00000395066 HMCN1Q96RW7 5635 aa4.74□□□□□ -1.65
CLK3-202ENST00000395066 KRTAP5-2Q701N4 177 aa4.72□□□□□ -1.65
CLK3-202ENST00000395066 LCE4AQ5TA78 99 aa4.63□□□□□ -1.67
CLK3-202ENST00000395066 MUC5ACP98088 5654 aa4.61□□□□□ -1.67
CLK3-202ENST00000395066 LCE1DQ5T752 114 aa4.59□□□□□ -1.67
CLK3-202ENST00000395066 KRTAP5-3Q6L8H2 238 aa4.53□□□□□ -1.68
CLK3-202ENST00000395066 KRTAP20-1Q3LI63 56 aa4.42□□□□□ -1.7
CLK3-202ENST00000395066 LCE1BQ5T7P3 118 aa4.42□□□□□ -1.7
CLK3-202ENST00000395066 LCE1EQ5T753 118 aa4.41□□□□□ -1.7
CLK3-202ENST00000395066 KRTAP4-11Q9BYQ6 195 aa4.26□□□□□ -1.73
CLK3-202ENST00000395066 KRTAP5-10Q6L8G5 202 aa4.25□□□□□ -1.73
CLK3-202ENST00000395066 KRTAP5-1Q6L8H4 278 aa4.14□□□□□ -1.75
CLK3-202ENST00000395066 KRTAP4-2Q9BYR5 136 aa4.14□□□□□ -1.75
CLK3-202ENST00000395066 LCE1CQ5T751 118 aa4.04□□□□□ -1.76
CLK3-202ENST00000395066 LCE1FQ5T754 118 aa3.98□□□□□ -1.77
CLK3-202ENST00000395066 KRTAP21-2Q3LI59 83 aa3.9□□□□□ -1.79
CLK3-202ENST00000395066 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.77□□□□□ -1.81
CLK3-202ENST00000395066 KRTAP5-8O75690 187 aa3.76□□□□□ -1.81
CLK3-202ENST00000395066 KRTAP4-4Q9BYR3 166 aa3.73□□□□□ -1.81
CLK3-202ENST00000395066 AHNAK2Q8IVF2 5795 aa3.67□□□□□ -1.82
CLK3-202ENST00000395066 MUC19Q7Z5P9 8384 aa3.64□□□□□ -1.83
CLK3-202ENST00000395066 KRTAP21-1Q3LI58 79 aa3.59□□□□□ -1.83
CLK3-202ENST00000395066 KRTAP5-7Q6L8G8 165 aa3.59□□□□□ -1.83
CLK3-202ENST00000395066 MUC5BQ9HC84 5762 aaPredicted RBP3.56□□□□□ -1.84
CLK3-202ENST00000395066 KRTAP4-12Q9BQ66 201 aa3.48□□□□□ -1.85
CLK3-202ENST00000395066 KRTAP5-11Q6L8G4 156 aa3.45□□□□□ -1.86
CLK3-202ENST00000395066 GPR98Q8WXG9 6306 aa3.44□□□□□ -1.86
CLK3-202ENST00000395066 KRTAP9-9Q9BYP9 154 aa3.1□□□□□ -1.91
CLK3-202ENST00000395066 PHGR1C9JFL3 82 aa3.02□□□□□ -1.93
CLK3-202ENST00000395066 AHNAKQ09666 5890 aaKnown RBP2.78□□□□□ -1.97
CLK3-202ENST00000395066 MUC16Q8WXI7 14507 aa2.03□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 67 ms