RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 CAMK2N1Q7Z7J9 78 aa2.71□□□□□ -1.98
LIMA1-202ENST00000394943 NEBP20929 6669 aa2.71□□□□□ -1.98
LIMA1-202ENST00000394943 NDUFAF8A1L188 74 aa2.71□□□□□ -1.98
LIMA1-202ENST00000394943 KRTAP25-1Q3LHN0 102 aa2.7□□□□□ -1.98
LIMA1-202ENST00000394943 ROMO1P60602 79 aa2.7□□□□□ -1.98
LIMA1-202ENST00000394943 KRTAP20-1Q3LI63 56 aa2.69□□□□□ -1.98
LIMA1-202ENST00000394943 KRTAP19-7Q3SYF9 63 aa2.68□□□□□ -1.98
LIMA1-202ENST00000394943 LCE1AQ5T7P2 110 aa2.66□□□□□ -1.98
LIMA1-202ENST00000394943 KRTAP8-1Q8IUC2 63 aa2.66□□□□□ -1.98
LIMA1-202ENST00000394943 MT1EP04732 61 aa2.63□□□□□ -1.99
LIMA1-202ENST00000394943 SYNE2Q8WXH0 6885 aaKnown RBP2.63□□□□□ -1.99
LIMA1-202ENST00000394943 KRTAP2-3P0C7H8 128 aa2.63□□□□□ -1.99
LIMA1-202ENST00000394943 KRTAP2-4Q9BYR9 128 aa2.63□□□□□ -1.99
LIMA1-202ENST00000394943 HMCN1Q96RW7 5635 aa2.62□□□□□ -1.99
LIMA1-202ENST00000394943 TNP1P09430 55 aa2.62□□□□□ -1.99
LIMA1-202ENST00000394943 LUZP6Q538Z0 58 aa2.6□□□□□ -1.99
LIMA1-202ENST00000394943 KMT2DO14686 5537 aa2.6□□□□□ -1.99
LIMA1-202ENST00000394943 KRTAP15-1Q3LI76 137 aa2.58□□□□□ -2
LIMA1-202ENST00000394943 LCE3AQ5TA76 89 aa2.58□□□□□ -2
LIMA1-202ENST00000394943 SPRR2FQ96RM1 72 aa2.57□□□□□ -2
LIMA1-202ENST00000394943 MUC12Q9UKN1 5478 aa2.57□□□□□ -2
LIMA1-202ENST00000394943 KRTAP19-5Q3LI72 72 aa2.56□□□□□ -2
LIMA1-202ENST00000394943 KRTAP19-3Q7Z4W3 81 aa2.56□□□□□ -2
LIMA1-202ENST00000394943 MT1LQ93083 61 aa2.54□□□□□ -2
LIMA1-202ENST00000394943 SPRR2EP22531 72 aa2.53□□□□□ -2
LIMA1-202ENST00000394943 SPRR2BP35325 72 aa2.53□□□□□ -2
LIMA1-202ENST00000394943 SPRR2AP35326 72 aa2.53□□□□□ -2
LIMA1-202ENST00000394943 MT1GP13640 62 aa2.53□□□□□ -2.01
LIMA1-202ENST00000394943 KRTAP2-2Q9BYT5 123 aa2.53□□□□□ -2.01
LIMA1-202ENST00000394943 KRTAP2-1Q9BYU5 128 aa2.53□□□□□ -2.01
LIMA1-202ENST00000394943 MDN1Q9NU22 5596 aa2.52□□□□□ -2.01
LIMA1-202ENST00000394943 PP632Q6XCG6 107 aa2.52□□□□□ -2.01
LIMA1-202ENST00000394943 KRTAP12-3P60328 96 aa2.48□□□□□ -2.01
LIMA1-202ENST00000394943 MT1MQ8N339 61 aa2.48□□□□□ -2.01
LIMA1-202ENST00000394943 SPRR2DP22532 72 aa2.45□□□□□ -2.02
LIMA1-202ENST00000394943 OBSCNQ5VST9 7968 aa2.42□□□□□ -2.02
LIMA1-202ENST00000394943 KRTAP5-4Q6L8H1 288 aa2.4□□□□□ -2.03
LIMA1-202ENST00000394943 KRTAP5-5Q701N2 237 aaPredicted RBP2.39□□□□□ -2.03
LIMA1-202ENST00000394943 LCE3CQ5T5A8 94 aa2.36□□□□□ -2.03
LIMA1-202ENST00000394943 DSTQ03001 7570 aaKnown RBP2.33□□□□□ -2.04
LIMA1-202ENST00000394943 MUC5BQ9HC84 5762 aaPredicted RBP2.29□□□□□ -2.04
LIMA1-202ENST00000394943 KRTAP4-3Q9BYR4 195 aa2.29□□□□□ -2.04
LIMA1-202ENST00000394943 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.29□□□□□ -2.04
LIMA1-202ENST00000394943 SPRR5A0A1B0GTR4 108 aa2.27□□□□□ -2.05
LIMA1-202ENST00000394943 SYNE1Q8NF91 8797 aaKnown RBP2.24□□□□□ -2.05
LIMA1-202ENST00000394943 KRTAP9-6A8MVA2 160 aa2.23□□□□□ -2.05
LIMA1-202ENST00000394943 MT1AP04731 61 aa2.19□□□□□ -2.06
LIMA1-202ENST00000394943 KRTAP5-10Q6L8G5 202 aa2.18□□□□□ -2.06
LIMA1-202ENST00000394943 GPR98Q8WXG9 6306 aa2.17□□□□□ -2.06
LIMA1-202ENST00000394943 KRTAP5-7Q6L8G8 165 aa2.16□□□□□ -2.06
LIMA1-202ENST00000394943 KRTAP5-2Q701N4 177 aa2.15□□□□□ -2.06
LIMA1-202ENST00000394943 KRTAP20-2Q3LI61 65 aa2.13□□□□□ -2.07
LIMA1-202ENST00000394943 AHNAK2Q8IVF2 5795 aa2.11□□□□□ -2.07
LIMA1-202ENST00000394943 KRTAP6-1Q3LI64 71 aa2.1□□□□□ -2.07
LIMA1-202ENST00000394943 KRTAP12-4P60329 112 aa2.07□□□□□ -2.08
LIMA1-202ENST00000394943 MT4P47944 62 aa2.04□□□□□ -2.08
LIMA1-202ENST00000394943 KRTAP5-11Q6L8G4 156 aa1.98□□□□□ -2.09
LIMA1-202ENST00000394943 MT3P25713 68 aa1.94□□□□□ -2.1
LIMA1-202ENST00000394943 KRTAP6-2Q3LI66 62 aa1.94□□□□□ -2.1
LIMA1-202ENST00000394943 LCE1FQ5T754 118 aa1.93□□□□□ -2.1
LIMA1-202ENST00000394943 KRTAP5-8O75690 187 aa1.87□□□□□ -2.11
LIMA1-202ENST00000394943 AHNAKQ09666 5890 aaKnown RBP1.87□□□□□ -2.11
LIMA1-202ENST00000394943 LCE1EQ5T753 118 aa1.87□□□□□ -2.11
LIMA1-202ENST00000394943 INE1O15225 51 aa1.86□□□□□ -2.11
LIMA1-202ENST00000394943 KRTAP5-1Q6L8H4 278 aa1.84□□□□□ -2.12
LIMA1-202ENST00000394943 KRTAP4-4Q9BYR3 166 aa1.76□□□□□ -2.13
LIMA1-202ENST00000394943 MUC5ACP98088 5654 aa1.76□□□□□ -2.13
LIMA1-202ENST00000394943 LCE3EQ5T5B0 92 aa1.73□□□□□ -2.13
LIMA1-202ENST00000394943 LCE1CQ5T751 118 aa1.72□□□□□ -2.13
LIMA1-202ENST00000394943 LCE1BQ5T7P3 118 aa1.72□□□□□ -2.13
LIMA1-202ENST00000394943 LCE3DQ9BYE3 92 aa1.68□□□□□ -2.14
LIMA1-202ENST00000394943 MUC19Q7Z5P9 8384 aa1.67□□□□□ -2.14
LIMA1-202ENST00000394943 PRM1P04553 51 aa1.53□□□□□ -2.16
LIMA1-202ENST00000394943 KRTAP21-2Q3LI59 83 aa1.45□□□□□ -2.18
LIMA1-202ENST00000394943 PHGR1C9JFL3 82 aa1.31□□□□□ -2.2
LIMA1-202ENST00000394943 KRTAP21-1Q3LI58 79 aa0.99□□□□□ -2.25
LIMA1-202ENST00000394943 MUC16Q8WXI7 14507 aa0.9□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 10.6 ms