RNA–Protein interactions for RNA: ENST00000394331.3

HOXC6-202, Transcript of homeobox C6, humanhuman

TSL 1 (best) BASIC

Gene HOXC6, Length 2,943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6-202ENST00000394331 KRTAP9-2Q9BYQ4 174 aa6.22□□□□□ -1.41
HOXC6-202ENST00000394331 KRTAP12-4P60329 112 aa6.12□□□□□ -1.43
HOXC6-202ENST00000394331 LCE5AQ5TCM9 118 aa6.1□□□□□ -1.43
HOXC6-202ENST00000394331 FSIP2Q5CZC0 6907 aa6.08□□□□□ -1.44
HOXC6-202ENST00000394331 KRTAP9-6A0A140TA67 174 aa5.97□□□□□ -1.45
HOXC6-202ENST00000394331 MT1GP13640 62 aa5.96□□□□□ -1.45
HOXC6-202ENST00000394331 KRTAP19-3Q7Z4W3 81 aa5.96□□□□□ -1.45
HOXC6-202ENST00000394331 MT1MQ8N339 61 aa5.93□□□□□ -1.46
HOXC6-202ENST00000394331 KRTAP9-4Q9BYQ2 154 aa5.92□□□□□ -1.46
HOXC6-202ENST00000394331 KRTAP4-3Q9BYR4 195 aa5.91□□□□□ -1.46
HOXC6-202ENST00000394331 CRCT1Q9UGL9 99 aa5.88□□□□□ -1.47
HOXC6-202ENST00000394331 LOC100996750A0A140TA64 210 aa5.87□□□□□ -1.47
HOXC6-202ENST00000394331 FCGBPQ9Y6R7 5405 aaPredicted RBP5.84□□□□□ -1.48
HOXC6-202ENST00000394331 MUC12Q9UKN1 5478 aa5.76□□□□□ -1.49
HOXC6-202ENST00000394331 SPRR2FQ96RM1 72 aa5.74□□□□□ -1.49
HOXC6-202ENST00000394331 KRTAP9-9Q9BYP9 154 aa5.7□□□□□ -1.5
HOXC6-202ENST00000394331 MT1AP04731 61 aa5.66□□□□□ -1.5
HOXC6-202ENST00000394331 KRTAP2-2Q9BYT5 123 aa5.61□□□□□ -1.51
HOXC6-202ENST00000394331 KRTAP9-7A8MTY7 169 aa5.57□□□□□ -1.52
HOXC6-202ENST00000394331 LCE1FQ5T754 118 aa5.53□□□□□ -1.52
HOXC6-202ENST00000394331 LCE4AQ5TA78 99 aa5.52□□□□□ -1.53
HOXC6-202ENST00000394331 PRM1P04553 51 aa5.5□□□□□ -1.53
HOXC6-202ENST00000394331 KRTAP5-5Q701N2 237 aaPredicted RBP5.49□□□□□ -1.53
HOXC6-202ENST00000394331 MACF1Q9UPN3 7388 aaKnown RBP5.47□□□□□ -1.53
HOXC6-202ENST00000394331 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.47□□□□□ -1.53
HOXC6-202ENST00000394331 LCE3EQ5T5B0 92 aa5.46□□□□□ -1.54
HOXC6-202ENST00000394331 LCE3BQ5TA77 95 aa5.45□□□□□ -1.54
HOXC6-202ENST00000394331 LCE3DQ9BYE3 92 aa5.44□□□□□ -1.54
HOXC6-202ENST00000394331 DSTQ03001 7570 aaKnown RBP5.43□□□□□ -1.54
HOXC6-202ENST00000394331 KRTAP4-9Q9BYQ8 210 aa5.41□□□□□ -1.54
HOXC6-202ENST00000394331 KRTAP6-3Q3LI67 103 aa5.4□□□□□ -1.54
HOXC6-202ENST00000394331 KRTAP5-9P26371 169 aa5.38□□□□□ -1.55
HOXC6-202ENST00000394331 SYNE2Q8WXH0 6885 aaKnown RBP5.37□□□□□ -1.55
HOXC6-202ENST00000394331 LCE1AQ5T7P2 110 aa5.37□□□□□ -1.55
HOXC6-202ENST00000394331 KRTAP6-1Q3LI64 71 aa5.34□□□□□ -1.55
HOXC6-202ENST00000394331 SPRR2EP22531 72 aa5.24□□□□□ -1.57
HOXC6-202ENST00000394331 SPRR2BP35325 72 aa5.24□□□□□ -1.57
HOXC6-202ENST00000394331 SPRR2AP35326 72 aa5.24□□□□□ -1.57
HOXC6-202ENST00000394331 MDN1Q9NU22 5596 aa5.23□□□□□ -1.57
HOXC6-202ENST00000394331 SYNE1Q8NF91 8797 aaKnown RBP5.16□□□□□ -1.58
HOXC6-202ENST00000394331 KRTAP6-2Q3LI66 62 aa5.12□□□□□ -1.59
HOXC6-202ENST00000394331 SPRR2DP22532 72 aa5.02□□□□□ -1.61
HOXC6-202ENST00000394331 MT3P25713 68 aa5□□□□□ -1.61
HOXC6-202ENST00000394331 NEBP20929 6669 aa4.96□□□□□ -1.61
HOXC6-202ENST00000394331 LCE1EQ5T753 118 aa4.95□□□□□ -1.62
HOXC6-202ENST00000394331 LCE1DQ5T752 114 aa4.73□□□□□ -1.65
HOXC6-202ENST00000394331 KRTAP20-1Q3LI63 56 aa4.71□□□□□ -1.66
HOXC6-202ENST00000394331 KRTAP5-4Q6L8H1 288 aa4.66□□□□□ -1.66
HOXC6-202ENST00000394331 OBSCNQ5VST9 7968 aa4.46□□□□□ -1.7
HOXC6-202ENST00000394331 KRTAP4-12Q9BQ66 201 aa4.45□□□□□ -1.7
HOXC6-202ENST00000394331 KRTAP4-6Q9BYQ5 205 aa4.42□□□□□ -1.7
HOXC6-202ENST00000394331 MT4P47944 62 aa4.38□□□□□ -1.71
HOXC6-202ENST00000394331 KRTAP20-2Q3LI61 65 aa4.36□□□□□ -1.71
HOXC6-202ENST00000394331 KRTAP5-2Q701N4 177 aa4.35□□□□□ -1.71
HOXC6-202ENST00000394331 KRTAP5-3Q6L8H2 238 aa4.15□□□□□ -1.75
HOXC6-202ENST00000394331 HMCN1Q96RW7 5635 aa4.1□□□□□ -1.75
HOXC6-202ENST00000394331 KRTAP4-11Q9BYQ6 195 aa4.02□□□□□ -1.77
HOXC6-202ENST00000394331 GPR98Q8WXG9 6306 aa3.97□□□□□ -1.77
HOXC6-202ENST00000394331 MUC5ACP98088 5654 aa3.94□□□□□ -1.78
HOXC6-202ENST00000394331 KRTAP5-10Q6L8G5 202 aa3.93□□□□□ -1.78
HOXC6-202ENST00000394331 LCE1BQ5T7P3 118 aa3.84□□□□□ -1.79
HOXC6-202ENST00000394331 AHNAK2Q8IVF2 5795 aa3.84□□□□□ -1.8
HOXC6-202ENST00000394331 KRTAP5-1Q6L8H4 278 aa3.81□□□□□ -1.8
HOXC6-202ENST00000394331 LCE1CQ5T751 118 aa3.74□□□□□ -1.81
HOXC6-202ENST00000394331 KRTAP4-2Q9BYR5 136 aa3.72□□□□□ -1.81
HOXC6-202ENST00000394331 KRTAP21-1Q3LI58 79 aa3.65□□□□□ -1.83
HOXC6-202ENST00000394331 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.54□□□□□ -1.84
HOXC6-202ENST00000394331 KRTAP5-7Q6L8G8 165 aa3.5□□□□□ -1.85
HOXC6-202ENST00000394331 KRTAP21-2Q3LI59 83 aa3.47□□□□□ -1.85
HOXC6-202ENST00000394331 MUC19Q7Z5P9 8384 aa3.45□□□□□ -1.86
HOXC6-202ENST00000394331 KRTAP5-8O75690 187 aa3.45□□□□□ -1.86
HOXC6-202ENST00000394331 KRTAP5-11Q6L8G4 156 aa3.22□□□□□ -1.89
HOXC6-202ENST00000394331 MUC5BQ9HC84 5762 aaPredicted RBP3.17□□□□□ -1.9
HOXC6-202ENST00000394331 AHNAKQ09666 5890 aaKnown RBP3.12□□□□□ -1.91
HOXC6-202ENST00000394331 KRTAP4-4Q9BYR3 166 aa3.09□□□□□ -1.91
HOXC6-202ENST00000394331 PHGR1C9JFL3 82 aa2.77□□□□□ -1.97
HOXC6-202ENST00000394331 MUC16Q8WXI7 14507 aa1.82□□□□□ -2.12
Retrieved 77 of 20,778 RNA–protein pairs in 6.8 ms