RNA–Protein interactions for RNA: ENST00000394180.6

CLDND1-202, Transcript of claudin domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDND1, Length 2,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-202ENST00000394180 MACF1Q9UPN3 7388 aaKnown RBP7.61□□□□□ -1.19
CLDND1-202ENST00000394180 KRTAP9-6A0A140TA67 174 aa7.58□□□□□ -1.2
CLDND1-202ENST00000394180 SYNE2Q8WXH0 6885 aaKnown RBP7.46□□□□□ -1.21
CLDND1-202ENST00000394180 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.28□□□□□ -1.24
CLDND1-202ENST00000394180 KRTAP19-7Q3SYF9 63 aa7.26□□□□□ -1.25
CLDND1-202ENST00000394180 MUC12Q9UKN1 5478 aa7.22□□□□□ -1.25
CLDND1-202ENST00000394180 SPRR2FQ96RM1 72 aa7.15□□□□□ -1.26
CLDND1-202ENST00000394180 MT1LQ93083 61 aa7.13□□□□□ -1.27
CLDND1-202ENST00000394180 MT1EP04732 61 aa7.12□□□□□ -1.27
CLDND1-202ENST00000394180 KRTAP4-7Q9BYR0 210 aa7.12□□□□□ -1.27
CLDND1-202ENST00000394180 KRTAP12-4P60329 112 aa7.08□□□□□ -1.28
CLDND1-202ENST00000394180 MDN1Q9NU22 5596 aa7.06□□□□□ -1.28
CLDND1-202ENST00000394180 KRTAP5-9P26371 169 aa7.05□□□□□ -1.28
CLDND1-202ENST00000394180 KRTAP6-3Q3LI67 103 aa6.99□□□□□ -1.29
CLDND1-202ENST00000394180 KRTAP9-7A8MTY7 169 aa6.93□□□□□ -1.3
CLDND1-202ENST00000394180 KRTAP19-3Q7Z4W3 81 aa6.87□□□□□ -1.31
CLDND1-202ENST00000394180 LCE1AQ5T7P2 110 aa6.84□□□□□ -1.32
CLDND1-202ENST00000394180 SPRR2EP22531 72 aa6.81□□□□□ -1.32
CLDND1-202ENST00000394180 SPRR2BP35325 72 aa6.81□□□□□ -1.32
CLDND1-202ENST00000394180 SPRR2AP35326 72 aa6.81□□□□□ -1.32
CLDND1-202ENST00000394180 LCE5AQ5TCM9 118 aa6.78□□□□□ -1.32
CLDND1-202ENST00000394180 MT1GP13640 62 aa6.76□□□□□ -1.33
CLDND1-202ENST00000394180 DSTQ03001 7570 aaKnown RBP6.76□□□□□ -1.33
CLDND1-202ENST00000394180 MT1MQ8N339 61 aa6.72□□□□□ -1.33
CLDND1-202ENST00000394180 KRTAP4-3Q9BYR4 195 aa6.68□□□□□ -1.34
CLDND1-202ENST00000394180 NEBP20929 6669 aa6.64□□□□□ -1.35
CLDND1-202ENST00000394180 MT1AP04731 61 aa6.62□□□□□ -1.35
CLDND1-202ENST00000394180 LOC100996750A0A140TA64 210 aa6.6□□□□□ -1.35
CLDND1-202ENST00000394180 SPRR2DP22532 72 aa6.54□□□□□ -1.36
CLDND1-202ENST00000394180 KRTAP4-6Q9BYQ5 205 aa6.38□□□□□ -1.39
CLDND1-202ENST00000394180 LCE3EQ5T5B0 92 aa6.37□□□□□ -1.39
CLDND1-202ENST00000394180 PRM1P04553 51 aa6.34□□□□□ -1.39
CLDND1-202ENST00000394180 KRTAP5-5Q701N2 237 aaPredicted RBP6.33□□□□□ -1.4
CLDND1-202ENST00000394180 LCE3DQ9BYE3 92 aa6.33□□□□□ -1.4
CLDND1-202ENST00000394180 LCE3BQ5TA77 95 aa6.3□□□□□ -1.4
CLDND1-202ENST00000394180 KRTAP4-9Q9BYQ8 210 aa6.17□□□□□ -1.42
CLDND1-202ENST00000394180 KRTAP2-2Q9BYT5 123 aa6.17□□□□□ -1.42
CLDND1-202ENST00000394180 KRTAP20-1Q3LI63 56 aa6.1□□□□□ -1.43
CLDND1-202ENST00000394180 KRTAP6-1Q3LI64 71 aa5.98□□□□□ -1.45
CLDND1-202ENST00000394180 KRTAP6-2Q3LI66 62 aa5.91□□□□□ -1.46
CLDND1-202ENST00000394180 SYNE1Q8NF91 8797 aaKnown RBP5.9□□□□□ -1.47
CLDND1-202ENST00000394180 KRTAP5-4Q6L8H1 288 aa5.84□□□□□ -1.47
CLDND1-202ENST00000394180 MT4P47944 62 aa5.76□□□□□ -1.49
CLDND1-202ENST00000394180 LCE4AQ5TA78 99 aa5.73□□□□□ -1.49
CLDND1-202ENST00000394180 LCE1DQ5T752 114 aa5.66□□□□□ -1.5
CLDND1-202ENST00000394180 HMCN1Q96RW7 5635 aa5.64□□□□□ -1.51
CLDND1-202ENST00000394180 KRTAP9-4Q9BYQ2 154 aa5.6□□□□□ -1.51
CLDND1-202ENST00000394180 KRTAP20-2Q3LI61 65 aa5.51□□□□□ -1.53
CLDND1-202ENST00000394180 KRTAP5-3Q6L8H2 238 aa5.47□□□□□ -1.53
CLDND1-202ENST00000394180 MT3P25713 68 aa5.38□□□□□ -1.55
CLDND1-202ENST00000394180 OBSCNQ5VST9 7968 aa5.38□□□□□ -1.55
CLDND1-202ENST00000394180 LCE1EQ5T753 118 aa5.32□□□□□ -1.56
CLDND1-202ENST00000394180 KRTAP5-2Q701N4 177 aa5.27□□□□□ -1.57
CLDND1-202ENST00000394180 AHNAK2Q8IVF2 5795 aa4.99□□□□□ -1.61
CLDND1-202ENST00000394180 KRTAP4-11Q9BYQ6 195 aa4.82□□□□□ -1.64
CLDND1-202ENST00000394180 KRTAP4-2Q9BYR5 136 aa4.81□□□□□ -1.64
CLDND1-202ENST00000394180 KRTAP9-9Q9BYP9 154 aa4.78□□□□□ -1.64
CLDND1-202ENST00000394180 KRTAP5-10Q6L8G5 202 aa4.76□□□□□ -1.65
CLDND1-202ENST00000394180 GPR98Q8WXG9 6306 aa4.65□□□□□ -1.66
CLDND1-202ENST00000394180 KRTAP5-8O75690 187 aa4.65□□□□□ -1.67
CLDND1-202ENST00000394180 KRTAP5-1Q6L8H4 278 aa4.62□□□□□ -1.67
CLDND1-202ENST00000394180 LCE1BQ5T7P3 118 aa4.46□□□□□ -1.7
CLDND1-202ENST00000394180 MUC5ACP98088 5654 aa4.45□□□□□ -1.7
CLDND1-202ENST00000394180 KRTAP4-12Q9BQ66 201 aa4.45□□□□□ -1.7
CLDND1-202ENST00000394180 KRTAP5-7Q6L8G8 165 aa4.39□□□□□ -1.71
CLDND1-202ENST00000394180 LCE1CQ5T751 118 aa4.34□□□□□ -1.72
CLDND1-202ENST00000394180 LCE1FQ5T754 118 aa4.33□□□□□ -1.72
CLDND1-202ENST00000394180 KRTAP21-1Q3LI58 79 aa4.24□□□□□ -1.73
CLDND1-202ENST00000394180 MUC5BQ9HC84 5762 aaPredicted RBP4.14□□□□□ -1.75
CLDND1-202ENST00000394180 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.02□□□□□ -1.77
CLDND1-202ENST00000394180 KRTAP21-2Q3LI59 83 aa3.89□□□□□ -1.79
CLDND1-202ENST00000394180 KRTAP5-11Q6L8G4 156 aa3.83□□□□□ -1.8
CLDND1-202ENST00000394180 AHNAKQ09666 5890 aaKnown RBP3.75□□□□□ -1.81
CLDND1-202ENST00000394180 KRTAP4-4Q9BYR3 166 aa3.52□□□□□ -1.85
CLDND1-202ENST00000394180 PHGR1C9JFL3 82 aa3.32□□□□□ -1.88
CLDND1-202ENST00000394180 MUC19Q7Z5P9 8384 aa3.23□□□□□ -1.89
CLDND1-202ENST00000394180 MUC16Q8WXI7 14507 aa2.07□□□□□ -2.08
Retrieved 77 of 20,778 RNA–protein pairs in 11 ms