RNA–Protein interactions for RNA: ENST00000393408.7

CBX1-202, Transcript of chromobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX1, Length 2,422 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1-202ENST00000393408 KRTAP19-6Q3LI70 58 aa6.34□□□□□ -1.39
CBX1-202ENST00000393408 KRTAP4-3Q9BYR4 195 aa6.14□□□□□ -1.43
CBX1-202ENST00000393408 LOC100996750A0A140TA64 210 aa6.12□□□□□ -1.43
CBX1-202ENST00000393408 MT1MQ8N339 61 aa6.08□□□□□ -1.44
CBX1-202ENST00000393408 MT1GP13640 62 aa6.07□□□□□ -1.44
CBX1-202ENST00000393408 FCGBPQ9Y6R7 5405 aaPredicted RBP6.07□□□□□ -1.44
CBX1-202ENST00000393408 KRTAP19-3Q7Z4W3 81 aa6.06□□□□□ -1.44
CBX1-202ENST00000393408 MUC12Q9UKN1 5478 aa5.97□□□□□ -1.45
CBX1-202ENST00000393408 KRTAP9-2Q9BYQ4 174 aa5.89□□□□□ -1.47
CBX1-202ENST00000393408 CRCT1Q9UGL9 99 aa5.89□□□□□ -1.47
CBX1-202ENST00000393408 LCE5AQ5TCM9 118 aa5.85□□□□□ -1.47
CBX1-202ENST00000393408 MACF1Q9UPN3 7388 aaKnown RBP5.81□□□□□ -1.48
CBX1-202ENST00000393408 SPRR2FQ96RM1 72 aa5.78□□□□□ -1.48
CBX1-202ENST00000393408 KRTAP12-4P60329 112 aa5.72□□□□□ -1.49
CBX1-202ENST00000393408 DSTQ03001 7570 aaKnown RBP5.69□□□□□ -1.5
CBX1-202ENST00000393408 SYNE2Q8WXH0 6885 aaKnown RBP5.68□□□□□ -1.5
CBX1-202ENST00000393408 LCE3BQ5TA77 95 aa5.62□□□□□ -1.51
CBX1-202ENST00000393408 KRTAP9-6A0A140TA67 174 aa5.59□□□□□ -1.51
CBX1-202ENST00000393408 MDN1Q9NU22 5596 aa5.55□□□□□ -1.52
CBX1-202ENST00000393408 KRTAP6-1Q3LI64 71 aa5.53□□□□□ -1.52
CBX1-202ENST00000393408 MT1AP04731 61 aa5.52□□□□□ -1.53
CBX1-202ENST00000393408 KRTAP4-9Q9BYQ8 210 aa5.52□□□□□ -1.53
CBX1-202ENST00000393408 KRTAP5-9P26371 169 aa5.46□□□□□ -1.54
CBX1-202ENST00000393408 LCE1AQ5T7P2 110 aa5.42□□□□□ -1.54
CBX1-202ENST00000393408 KRTAP5-5Q701N2 237 aaPredicted RBP5.38□□□□□ -1.55
CBX1-202ENST00000393408 SYNE1Q8NF91 8797 aaKnown RBP5.37□□□□□ -1.55
CBX1-202ENST00000393408 SPRR2EP22531 72 aa5.34□□□□□ -1.55
CBX1-202ENST00000393408 SPRR2BP35325 72 aa5.34□□□□□ -1.55
CBX1-202ENST00000393408 SPRR2AP35326 72 aa5.34□□□□□ -1.55
CBX1-202ENST00000393408 LCE3DQ9BYE3 92 aa5.34□□□□□ -1.56
CBX1-202ENST00000393408 KRTAP4-6Q9BYQ5 205 aa5.28□□□□□ -1.56
CBX1-202ENST00000393408 LCE3EQ5T5B0 92 aa5.27□□□□□ -1.57
CBX1-202ENST00000393408 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.22□□□□□ -1.57
CBX1-202ENST00000393408 KRTAP6-3Q3LI67 103 aa5.15□□□□□ -1.58
CBX1-202ENST00000393408 KRTAP9-4Q9BYQ2 154 aa5.15□□□□□ -1.59
CBX1-202ENST00000393408 KRTAP9-7A8MTY7 169 aa5.13□□□□□ -1.59
CBX1-202ENST00000393408 SPRR2DP22532 72 aa5.13□□□□□ -1.59
CBX1-202ENST00000393408 PRM1P04553 51 aa5.07□□□□□ -1.6
CBX1-202ENST00000393408 KRTAP6-2Q3LI66 62 aa4.93□□□□□ -1.62
CBX1-202ENST00000393408 MT3P25713 68 aa4.9□□□□□ -1.62
CBX1-202ENST00000393408 NEBP20929 6669 aa4.77□□□□□ -1.65
CBX1-202ENST00000393408 OBSCNQ5VST9 7968 aa4.75□□□□□ -1.65
CBX1-202ENST00000393408 KRTAP5-4Q6L8H1 288 aa4.68□□□□□ -1.66
CBX1-202ENST00000393408 MT4P47944 62 aa4.52□□□□□ -1.69
CBX1-202ENST00000393408 KRTAP2-2Q9BYT5 123 aa4.47□□□□□ -1.69
CBX1-202ENST00000393408 KRTAP20-1Q3LI63 56 aa4.45□□□□□ -1.7
CBX1-202ENST00000393408 LCE4AQ5TA78 99 aa4.44□□□□□ -1.7
CBX1-202ENST00000393408 KRTAP5-2Q701N4 177 aa4.41□□□□□ -1.7
CBX1-202ENST00000393408 KRTAP20-2Q3LI61 65 aa4.39□□□□□ -1.71
CBX1-202ENST00000393408 HMCN1Q96RW7 5635 aa4.31□□□□□ -1.72
CBX1-202ENST00000393408 LCE1DQ5T752 114 aa4.31□□□□□ -1.72
CBX1-202ENST00000393408 KRTAP4-12Q9BQ66 201 aa4.3□□□□□ -1.72
CBX1-202ENST00000393408 KRTAP5-3Q6L8H2 238 aa4.19□□□□□ -1.74
CBX1-202ENST00000393408 KRTAP9-9Q9BYP9 154 aa4.15□□□□□ -1.75
CBX1-202ENST00000393408 MUC5ACP98088 5654 aa4.13□□□□□ -1.75
CBX1-202ENST00000393408 KRTAP4-2Q9BYR5 136 aa4.02□□□□□ -1.77
CBX1-202ENST00000393408 LCE1EQ5T753 118 aa4□□□□□ -1.77
CBX1-202ENST00000393408 LCE1BQ5T7P3 118 aa3.92□□□□□ -1.78
CBX1-202ENST00000393408 KRTAP5-10Q6L8G5 202 aa3.91□□□□□ -1.78
CBX1-202ENST00000393408 KRTAP5-1Q6L8H4 278 aa3.87□□□□□ -1.79
CBX1-202ENST00000393408 KRTAP4-11Q9BYQ6 195 aa3.81□□□□□ -1.8
CBX1-202ENST00000393408 LCE1CQ5T751 118 aa3.78□□□□□ -1.8
CBX1-202ENST00000393408 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.59□□□□□ -1.83
CBX1-202ENST00000393408 GPR98Q8WXG9 6306 aa3.59□□□□□ -1.84
CBX1-202ENST00000393408 AHNAK2Q8IVF2 5795 aa3.58□□□□□ -1.84
CBX1-202ENST00000393408 KRTAP21-2Q3LI59 83 aa3.58□□□□□ -1.84
CBX1-202ENST00000393408 KRTAP5-8O75690 187 aa3.54□□□□□ -1.84
CBX1-202ENST00000393408 KRTAP5-7Q6L8G8 165 aa3.43□□□□□ -1.86
CBX1-202ENST00000393408 KRTAP5-11Q6L8G4 156 aa3.24□□□□□ -1.89
CBX1-202ENST00000393408 KRTAP4-4Q9BYR3 166 aa3.23□□□□□ -1.89
CBX1-202ENST00000393408 KRTAP21-1Q3LI58 79 aa3.22□□□□□ -1.89
CBX1-202ENST00000393408 MUC5BQ9HC84 5762 aaPredicted RBP3.22□□□□□ -1.89
CBX1-202ENST00000393408 MUC19Q7Z5P9 8384 aa2.99□□□□□ -1.93
CBX1-202ENST00000393408 LCE1FQ5T754 118 aa2.86□□□□□ -1.95
CBX1-202ENST00000393408 AHNAKQ09666 5890 aaKnown RBP2.83□□□□□ -1.96
CBX1-202ENST00000393408 PHGR1C9JFL3 82 aa2.8□□□□□ -1.96
CBX1-202ENST00000393408 MUC16Q8WXI7 14507 aa1.91□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 121.5 ms