RNA–Protein interactions for RNA: ENST00000393077.2

VTI1A-201, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VTI1A, Length 4,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-201ENST00000393077 KRTAP9-2Q9BYQ4 174 aa2.58□□□□□ -2
VTI1A-201ENST00000393077 USH2AO75445 5202 aa2.56□□□□□ -2
VTI1A-201ENST00000393077 SYNE1Q8NF91 8797 aaKnown RBP2.55□□□□□ -2
VTI1A-201ENST00000393077 SPRR2FQ96RM1 72 aa2.54□□□□□ -2
VTI1A-201ENST00000393077 KRTAP4-7Q9BYR0 210 aa2.5□□□□□ -2.01
VTI1A-201ENST00000393077 KRTAP9-6A8MVA2 160 aa2.49□□□□□ -2.01
VTI1A-201ENST00000393077 PRM1P04553 51 aa2.45□□□□□ -2.02
VTI1A-201ENST00000393077 KMT2DO14686 5537 aa2.42□□□□□ -2.02
VTI1A-201ENST00000393077 LCE3BQ5TA77 95 aa2.42□□□□□ -2.02
VTI1A-201ENST00000393077 LCE1FQ5T754 118 aa2.41□□□□□ -2.02
VTI1A-201ENST00000393077 KRTAP19-6Q3LI70 58 aa2.41□□□□□ -2.02
VTI1A-201ENST00000393077 LCE3EQ5T5B0 92 aa2.4□□□□□ -2.03
VTI1A-201ENST00000393077 OBSCNQ5VST9 7968 aa2.4□□□□□ -2.03
VTI1A-201ENST00000393077 LCE3DQ9BYE3 92 aa2.4□□□□□ -2.03
VTI1A-201ENST00000393077 MT1GP13640 62 aa2.38□□□□□ -2.03
VTI1A-201ENST00000393077 MT1EP04732 61 aa2.37□□□□□ -2.03
VTI1A-201ENST00000393077 DSTQ03001 7570 aaKnown RBP2.37□□□□□ -2.03
VTI1A-201ENST00000393077 MT1LQ93083 61 aa2.36□□□□□ -2.03
VTI1A-201ENST00000393077 KRTAP19-7Q3SYF9 63 aa2.35□□□□□ -2.03
VTI1A-201ENST00000393077 SPRR2EP22531 72 aa2.34□□□□□ -2.03
VTI1A-201ENST00000393077 SPRR2BP35325 72 aa2.34□□□□□ -2.03
VTI1A-201ENST00000393077 SPRR2AP35326 72 aa2.34□□□□□ -2.03
VTI1A-201ENST00000393077 KRTAP19-3Q7Z4W3 81 aa2.32□□□□□ -2.04
VTI1A-201ENST00000393077 LCE1AQ5T7P2 110 aa2.32□□□□□ -2.04
VTI1A-201ENST00000393077 SSPOA2VEC9 5147 aa2.31□□□□□ -2.04
VTI1A-201ENST00000393077 FCGBPQ9Y6R7 5405 aaPredicted RBP2.31□□□□□ -2.04
VTI1A-201ENST00000393077 KRTAP4-3Q9BYR4 195 aa2.31□□□□□ -2.04
VTI1A-201ENST00000393077 LOC100996750A0A140TA64 210 aa2.3□□□□□ -2.04
VTI1A-201ENST00000393077 GPR98Q8WXG9 6306 aa2.29□□□□□ -2.04
VTI1A-201ENST00000393077 KRTAP4-9Q9BYQ8 210 aa2.27□□□□□ -2.05
VTI1A-201ENST00000393077 MUC12Q9UKN1 5478 aa2.27□□□□□ -2.05
VTI1A-201ENST00000393077 MT1MQ8N339 61 aa2.26□□□□□ -2.05
VTI1A-201ENST00000393077 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.25□□□□□ -2.05
VTI1A-201ENST00000393077 SPRR2DP22532 72 aa2.25□□□□□ -2.05
VTI1A-201ENST00000393077 SYNE2Q8WXH0 6885 aaKnown RBP2.24□□□□□ -2.05
VTI1A-201ENST00000393077 KRTAP6-3Q3LI67 103 aa2.24□□□□□ -2.05
VTI1A-201ENST00000393077 MT3P25713 68 aa2.24□□□□□ -2.05
VTI1A-201ENST00000393077 MACF1Q9UPN3 7388 aaKnown RBP2.24□□□□□ -2.05
VTI1A-201ENST00000393077 LCE1EQ5T753 118 aa2.23□□□□□ -2.05
VTI1A-201ENST00000393077 KRTAP2-2Q9BYT5 123 aa2.23□□□□□ -2.05
VTI1A-201ENST00000393077 KRTAP4-12Q9BQ66 201 aa2.2□□□□□ -2.06
VTI1A-201ENST00000393077 MT1AP04731 61 aa2.15□□□□□ -2.07
VTI1A-201ENST00000393077 KRTAP6-2Q3LI66 62 aa2.15□□□□□ -2.07
VTI1A-201ENST00000393077 LCE1DQ5T752 114 aa2.09□□□□□ -2.07
VTI1A-201ENST00000393077 MDN1Q9NU22 5596 aa2.04□□□□□ -2.08
VTI1A-201ENST00000393077 MUC19Q7Z5P9 8384 aa2.04□□□□□ -2.08
VTI1A-201ENST00000393077 MT4P47944 62 aa2.04□□□□□ -2.08
VTI1A-201ENST00000393077 KRTAP20-1Q3LI63 56 aa2.03□□□□□ -2.08
VTI1A-201ENST00000393077 KRTAP5-5Q701N2 237 aaPredicted RBP2.03□□□□□ -2.08
VTI1A-201ENST00000393077 KRTAP6-1Q3LI64 71 aa2.02□□□□□ -2.09
VTI1A-201ENST00000393077 KRTAP4-6Q9BYQ5 205 aa2.01□□□□□ -2.09
VTI1A-201ENST00000393077 KRTAP5-9P26371 169 aa1.97□□□□□ -2.09
VTI1A-201ENST00000393077 NEBP20929 6669 aa1.95□□□□□ -2.1
VTI1A-201ENST00000393077 KRTAP4-11Q9BYQ6 195 aa1.82□□□□□ -2.12
VTI1A-201ENST00000393077 LCE1BQ5T7P3 118 aa1.81□□□□□ -2.12
VTI1A-201ENST00000393077 KRTAP20-2Q3LI61 65 aa1.7□□□□□ -2.14
VTI1A-201ENST00000393077 KRTAP5-7Q6L8G8 165 aa1.67□□□□□ -2.14
VTI1A-201ENST00000393077 KRTAP4-2Q9BYR5 136 aa1.65□□□□□ -2.15
VTI1A-201ENST00000393077 KRTAP5-3Q6L8H2 238 aa1.63□□□□□ -2.15
VTI1A-201ENST00000393077 KRTAP5-10Q6L8G5 202 aa1.63□□□□□ -2.15
VTI1A-201ENST00000393077 HMCN1Q96RW7 5635 aa1.61□□□□□ -2.15
VTI1A-201ENST00000393077 KRTAP5-4Q6L8H1 288 aa1.61□□□□□ -2.15
VTI1A-201ENST00000393077 AHNAK2Q8IVF2 5795 aa1.6□□□□□ -2.15
VTI1A-201ENST00000393077 MUC5ACP98088 5654 aa1.57□□□□□ -2.16
VTI1A-201ENST00000393077 MUC5BQ9HC84 5762 aaPredicted RBP1.54□□□□□ -2.16
VTI1A-201ENST00000393077 AHNAKQ09666 5890 aaKnown RBP1.54□□□□□ -2.16
VTI1A-201ENST00000393077 LCE1CQ5T751 118 aa1.5□□□□□ -2.17
VTI1A-201ENST00000393077 KRTAP5-2Q701N4 177 aa1.44□□□□□ -2.18
VTI1A-201ENST00000393077 KRTAP4-4Q9BYR3 166 aa1.39□□□□□ -2.19
VTI1A-201ENST00000393077 KRTAP21-1Q3LI58 79 aa1.35□□□□□ -2.19
VTI1A-201ENST00000393077 KRTAP5-8O75690 187 aa1.34□□□□□ -2.2
VTI1A-201ENST00000393077 KRTAP5-1Q6L8H4 278 aa1.29□□□□□ -2.2
VTI1A-201ENST00000393077 KRTAP5-11Q6L8G4 156 aa1.28□□□□□ -2.21
VTI1A-201ENST00000393077 KRTAP21-2Q3LI59 83 aa1.17□□□□□ -2.22
VTI1A-201ENST00000393077 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.11□□□□□ -2.23
VTI1A-201ENST00000393077 PHGR1C9JFL3 82 aa0.98□□□□□ -2.25
VTI1A-201ENST00000393077 MUC16Q8WXI7 14507 aa0.72□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 78.9 ms