RNA–Protein interactions for RNA: ENST00000382099.2

VLDLR-202, Transcript of very low density lipoprotein receptor, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VLDLR, Length 3,240 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VLDLR-202ENST00000382099 SYNE1Q8NF91 8797 aaKnown RBP4.97□□□□□ -1.61
VLDLR-202ENST00000382099 CRCT1Q9UGL9 99 aa4.92□□□□□ -1.62
VLDLR-202ENST00000382099 KRTAP19-7Q3SYF9 63 aa4.85□□□□□ -1.63
VLDLR-202ENST00000382099 LOC100996750A0A140TA64 210 aa4.83□□□□□ -1.64
VLDLR-202ENST00000382099 LCE2DQ5TA82 110 aaPredicted RBP4.82□□□□□ -1.64
VLDLR-202ENST00000382099 KRTAP9-2Q9BYQ4 174 aa4.82□□□□□ -1.64
VLDLR-202ENST00000382099 KRTAP4-3Q9BYR4 195 aa4.82□□□□□ -1.64
VLDLR-202ENST00000382099 SYNE2Q8WXH0 6885 aaKnown RBP4.76□□□□□ -1.65
VLDLR-202ENST00000382099 MT1LQ93083 61 aa4.76□□□□□ -1.65
VLDLR-202ENST00000382099 MT1GP13640 62 aa4.72□□□□□ -1.65
VLDLR-202ENST00000382099 MACF1Q9UPN3 7388 aaKnown RBP4.68□□□□□ -1.66
VLDLR-202ENST00000382099 KRTAP4-9Q9BYQ8 210 aa4.68□□□□□ -1.66
VLDLR-202ENST00000382099 MT1EP04732 61 aa4.67□□□□□ -1.66
VLDLR-202ENST00000382099 PRM1P04553 51 aa4.67□□□□□ -1.66
VLDLR-202ENST00000382099 KRTAP9-7A8MTY7 169 aa4.63□□□□□ -1.67
VLDLR-202ENST00000382099 LCE3BQ5TA77 95 aa4.63□□□□□ -1.67
VLDLR-202ENST00000382099 MDN1Q9NU22 5596 aa4.61□□□□□ -1.67
VLDLR-202ENST00000382099 KRTAP9-6A0A140TA67 174 aa4.6□□□□□ -1.67
VLDLR-202ENST00000382099 KRTAP19-4Q3LI73 84 aa4.57□□□□□ -1.68
VLDLR-202ENST00000382099 KRTAP6-3Q3LI67 103 aa4.55□□□□□ -1.68
VLDLR-202ENST00000382099 LCE1AQ5T7P2 110 aa4.55□□□□□ -1.68
VLDLR-202ENST00000382099 SPRR2FQ96RM1 72 aa4.45□□□□□ -1.7
VLDLR-202ENST00000382099 LCE3DQ9BYE3 92 aa4.44□□□□□ -1.7
VLDLR-202ENST00000382099 LCE3EQ5T5B0 92 aa4.43□□□□□ -1.7
VLDLR-202ENST00000382099 KRTAP2-2Q9BYT5 123 aa4.43□□□□□ -1.7
VLDLR-202ENST00000382099 KRTAP19-6Q3LI70 58 aa4.41□□□□□ -1.7
VLDLR-202ENST00000382099 KRTAP5-5Q701N2 237 aaPredicted RBP4.38□□□□□ -1.71
VLDLR-202ENST00000382099 MT1MQ8N339 61 aa4.36□□□□□ -1.71
VLDLR-202ENST00000382099 LCE1EQ5T753 118 aa4.34□□□□□ -1.72
VLDLR-202ENST00000382099 KRTAP19-3Q7Z4W3 81 aa4.31□□□□□ -1.72
VLDLR-202ENST00000382099 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.27□□□□□ -1.73
VLDLR-202ENST00000382099 MT1AP04731 61 aa4.24□□□□□ -1.73
VLDLR-202ENST00000382099 KRTAP6-2Q3LI66 62 aa4.23□□□□□ -1.73
VLDLR-202ENST00000382099 LCE5AQ5TCM9 118 aa4.15□□□□□ -1.74
VLDLR-202ENST00000382099 KRTAP6-1Q3LI64 71 aa4.13□□□□□ -1.75
VLDLR-202ENST00000382099 LCE1DQ5T752 114 aa4.12□□□□□ -1.75
VLDLR-202ENST00000382099 SPRR2EP22531 72 aa3.97□□□□□ -1.77
VLDLR-202ENST00000382099 SPRR2BP35325 72 aa3.97□□□□□ -1.77
VLDLR-202ENST00000382099 SPRR2AP35326 72 aa3.97□□□□□ -1.77
VLDLR-202ENST00000382099 KRTAP5-9P26371 169 aa3.95□□□□□ -1.78
VLDLR-202ENST00000382099 NEBP20929 6669 aa3.8□□□□□ -1.8
VLDLR-202ENST00000382099 SPRR2DP22532 72 aa3.76□□□□□ -1.81
VLDLR-202ENST00000382099 KRTAP20-1Q3LI63 56 aa3.68□□□□□ -1.82
VLDLR-202ENST00000382099 KRTAP9-4Q9BYQ2 154 aa3.67□□□□□ -1.82
VLDLR-202ENST00000382099 LCE1FQ5T754 118 aa3.63□□□□□ -1.83
VLDLR-202ENST00000382099 MUC19Q7Z5P9 8384 aa3.61□□□□□ -1.83
VLDLR-202ENST00000382099 MT4P47944 62 aa3.61□□□□□ -1.83
VLDLR-202ENST00000382099 MT3P25713 68 aa3.55□□□□□ -1.84
VLDLR-202ENST00000382099 KRTAP4-11Q9BYQ6 195 aa3.52□□□□□ -1.85
VLDLR-202ENST00000382099 KRTAP4-6Q9BYQ5 205 aa3.49□□□□□ -1.85
VLDLR-202ENST00000382099 HMCN1Q96RW7 5635 aa3.4□□□□□ -1.86
VLDLR-202ENST00000382099 LCE4AQ5TA78 99 aa3.27□□□□□ -1.89
VLDLR-202ENST00000382099 KRTAP5-4Q6L8H1 288 aa3.25□□□□□ -1.89
VLDLR-202ENST00000382099 MUC5ACP98088 5654 aa3.21□□□□□ -1.9
VLDLR-202ENST00000382099 LCE1BQ5T7P3 118 aa3.2□□□□□ -1.9
VLDLR-202ENST00000382099 KRTAP20-2Q3LI61 65 aa3.13□□□□□ -1.91
VLDLR-202ENST00000382099 KRTAP5-2Q701N4 177 aa3.08□□□□□ -1.92
VLDLR-202ENST00000382099 KRTAP5-10Q6L8G5 202 aa3.02□□□□□ -1.93
VLDLR-202ENST00000382099 GPR98Q8WXG9 6306 aa2.92□□□□□ -1.94
VLDLR-202ENST00000382099 AHNAK2Q8IVF2 5795 aa2.92□□□□□ -1.94
VLDLR-202ENST00000382099 KRTAP5-3Q6L8H2 238 aa2.92□□□□□ -1.94
VLDLR-202ENST00000382099 LCE1CQ5T751 118 aa2.91□□□□□ -1.94
VLDLR-202ENST00000382099 MUC5BQ9HC84 5762 aaPredicted RBP2.86□□□□□ -1.95
VLDLR-202ENST00000382099 KRTAP21-1Q3LI58 79 aa2.81□□□□□ -1.96
VLDLR-202ENST00000382099 KRTAP4-4Q9BYR3 166 aa2.81□□□□□ -1.96
VLDLR-202ENST00000382099 KRTAP5-1Q6L8H4 278 aa2.79□□□□□ -1.96
VLDLR-202ENST00000382099 KRTAP5-7Q6L8G8 165 aa2.73□□□□□ -1.97
VLDLR-202ENST00000382099 KRTAP4-2Q9BYR5 136 aa2.71□□□□□ -1.98
VLDLR-202ENST00000382099 KRTAP4-12Q9BQ66 201 aa2.65□□□□□ -1.99
VLDLR-202ENST00000382099 KRTAP5-8O75690 187 aa2.61□□□□□ -1.99
VLDLR-202ENST00000382099 KRTAP21-2Q3LI59 83 aa2.59□□□□□ -2
VLDLR-202ENST00000382099 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.5□□□□□ -2.01
VLDLR-202ENST00000382099 KRTAP9-9Q9BYP9 154 aa2.46□□□□□ -2.02
VLDLR-202ENST00000382099 AHNAKQ09666 5890 aaKnown RBP2.35□□□□□ -2.03
VLDLR-202ENST00000382099 KRTAP5-11Q6L8G4 156 aa2.25□□□□□ -2.05
VLDLR-202ENST00000382099 PHGR1C9JFL3 82 aa1.96□□□□□ -2.09
VLDLR-202ENST00000382099 MUC16Q8WXI7 14507 aa1.46□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 12.6 ms