RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 KRTAP20-1Q3LI63 56 aa3.69□□□□□ -1.82
CHD3-203ENST00000380358 TNXBP22105 4242 aa3.66□□□□□ -1.82
CHD3-203ENST00000380358 RYR3Q15413 4870 aa3.65□□□□□ -1.83
CHD3-203ENST00000380358 KRTAP9-6A0A140TA67 174 aa3.65□□□□□ -1.83
CHD3-203ENST00000380358 LRP2P98164 4655 aa3.57□□□□□ -1.84
CHD3-203ENST00000380358 LCE4AQ5TA78 99 aa3.53□□□□□ -1.84
CHD3-203ENST00000380358 KMT2CQ8NEZ4 4911 aaKnown RBP3.51□□□□□ -1.85
CHD3-203ENST00000380358 KRTAP9-7A8MTY7 169 aa3.5□□□□□ -1.85
CHD3-203ENST00000380358 KRTAP6-2Q3LI66 62 aa3.46□□□□□ -1.86
CHD3-203ENST00000380358 KRTAP2-3P0C7H8 128 aa3.44□□□□□ -1.86
CHD3-203ENST00000380358 KRTAP2-4Q9BYR9 128 aa3.44□□□□□ -1.86
CHD3-203ENST00000380358 KRTAP2-1Q9BYU5 128 aa3.44□□□□□ -1.86
CHD3-203ENST00000380358 FSIP2Q5CZC0 6907 aa3.41□□□□□ -1.86
CHD3-203ENST00000380358 KIAA1109Q2LD37 5005 aa3.38□□□□□ -1.87
CHD3-203ENST00000380358 MT1AP04731 61 aa3.38□□□□□ -1.87
CHD3-203ENST00000380358 MUC17Q685J3 4493 aa3.34□□□□□ -1.88
CHD3-203ENST00000380358 KRTAP6-1Q3LI64 71 aa3.33□□□□□ -1.88
CHD3-203ENST00000380358 LCE2AQ5TA79 106 aaPredicted RBP3.32□□□□□ -1.88
CHD3-203ENST00000380358 HERC2O95714 4834 aa3.29□□□□□ -1.88
CHD3-203ENST00000380358 RYR2Q92736 4967 aa3.29□□□□□ -1.88
CHD3-203ENST00000380358 MUC2Q02817 5179 aa3.26□□□□□ -1.89
CHD3-203ENST00000380358 SYNE1Q8NF91 8797 aaKnown RBP3.25□□□□□ -1.89
CHD3-203ENST00000380358 KRTAP19-2Q3LHN2 52 aa3.24□□□□□ -1.89
CHD3-203ENST00000380358 KRTAP19-7Q3SYF9 63 aa3.23□□□□□ -1.89
CHD3-203ENST00000380358 EPPK1P58107 5090 aaKnown RBP3.22□□□□□ -1.89
CHD3-203ENST00000380358 KRTAP9-4Q9BYQ2 154 aa3.21□□□□□ -1.9
CHD3-203ENST00000380358 ABCA13Q86UQ4 5058 aa3.19□□□□□ -1.9
CHD3-203ENST00000380358 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.19□□□□□ -1.9
CHD3-203ENST00000380358 KRTAP2-2Q9BYT5 123 aa3.18□□□□□ -1.9
CHD3-203ENST00000380358 KRTAP9-9Q9BYP9 154 aa3.17□□□□□ -1.9
CHD3-203ENST00000380358 PCLOQ9Y6V0 5065 aa3.17□□□□□ -1.9
CHD3-203ENST00000380358 BIRC6Q9NR09 4857 aa3.15□□□□□ -1.9
CHD3-203ENST00000380358 KRTAP20-2Q3LI61 65 aa3.13□□□□□ -1.91
CHD3-203ENST00000380358 KRTAP6-3Q3LI67 103 aa3.12□□□□□ -1.91
CHD3-203ENST00000380358 OBSCNQ5VST9 7968 aa3.11□□□□□ -1.91
CHD3-203ENST00000380358 HERC1Q15751 4861 aa3.09□□□□□ -1.91
CHD3-203ENST00000380358 KRTAP4-11Q9BYQ6 195 aa3.07□□□□□ -1.92
CHD3-203ENST00000380358 FAT4Q6V0I7 4981 aa3.04□□□□□ -1.92
CHD3-203ENST00000380358 HMCN2Q8NDA2 5059 aa3.03□□□□□ -1.93
CHD3-203ENST00000380358 KRTAP4-4Q9BYR3 166 aa3.03□□□□□ -1.93
CHD3-203ENST00000380358 KRTAP4-6Q9BYQ5 205 aa3.01□□□□□ -1.93
CHD3-203ENST00000380358 KRTAP9-6A8MVA2 160 aa3□□□□□ -1.93
CHD3-203ENST00000380358 KRTAP4-12Q9BQ66 201 aa2.98□□□□□ -1.93
CHD3-203ENST00000380358 KRTAP4-2Q9BYR5 136 aa2.98□□□□□ -1.93
CHD3-203ENST00000380358 RNF213Q63HN8 5207 aa2.92□□□□□ -1.94
CHD3-203ENST00000380358 UBR4Q5T4S7 5183 aa2.91□□□□□ -1.94
CHD3-203ENST00000380358 DSTQ03001 7570 aaKnown RBP2.84□□□□□ -1.96
CHD3-203ENST00000380358 KMT2DO14686 5537 aa2.83□□□□□ -1.96
CHD3-203ENST00000380358 MACF1Q9UPN3 7388 aaKnown RBP2.8□□□□□ -1.96
CHD3-203ENST00000380358 USH2AO75445 5202 aa2.72□□□□□ -1.97
CHD3-203ENST00000380358 FCGBPQ9Y6R7 5405 aaPredicted RBP2.69□□□□□ -1.98
CHD3-203ENST00000380358 MUC19Q7Z5P9 8384 aa2.6□□□□□ -1.99
CHD3-203ENST00000380358 NEBP20929 6669 aa2.45□□□□□ -2.02
CHD3-203ENST00000380358 SSPOA2VEC9 5147 aa2.41□□□□□ -2.02
CHD3-203ENST00000380358 MUC12Q9UKN1 5478 aa2.39□□□□□ -2.03
CHD3-203ENST00000380358 KRTAP5-5Q701N2 237 aaPredicted RBP2.3□□□□□ -2.04
CHD3-203ENST00000380358 KRTAP5-9P26371 169 aa2.25□□□□□ -2.05
CHD3-203ENST00000380358 KRTAP5-4Q6L8H1 288 aa2.24□□□□□ -2.05
CHD3-203ENST00000380358 PHGR1C9JFL3 82 aa2.21□□□□□ -2.06
CHD3-203ENST00000380358 KRTAP5-3Q6L8H2 238 aa2.06□□□□□ -2.08
CHD3-203ENST00000380358 MDN1Q9NU22 5596 aa2.06□□□□□ -2.08
CHD3-203ENST00000380358 GPR98Q8WXG9 6306 aa2.03□□□□□ -2.09
CHD3-203ENST00000380358 KRTAP5-8O75690 187 aa1.97□□□□□ -2.09
CHD3-203ENST00000380358 MUC5ACP98088 5654 aa1.96□□□□□ -2.1
CHD3-203ENST00000380358 KRTAP5-2Q701N4 177 aa1.82□□□□□ -2.12
CHD3-203ENST00000380358 HMCN1Q96RW7 5635 aa1.79□□□□□ -2.12
CHD3-203ENST00000380358 KRTAP5-10Q6L8G5 202 aa1.68□□□□□ -2.14
CHD3-203ENST00000380358 KRTAP5-1Q6L8H4 278 aa1.61□□□□□ -2.15
CHD3-203ENST00000380358 MUC5BQ9HC84 5762 aaPredicted RBP1.53□□□□□ -2.16
CHD3-203ENST00000380358 AHNAK2Q8IVF2 5795 aa1.52□□□□□ -2.17
CHD3-203ENST00000380358 KRTAP21-1Q3LI58 79 aa1.49□□□□□ -2.17
CHD3-203ENST00000380358 KRTAP5-11Q6L8G4 156 aa1.39□□□□□ -2.19
CHD3-203ENST00000380358 AHNAKQ09666 5890 aaKnown RBP1.37□□□□□ -2.19
CHD3-203ENST00000380358 KRTAP21-2Q3LI59 83 aa1.36□□□□□ -2.19
CHD3-203ENST00000380358 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.32□□□□□ -2.2
CHD3-203ENST00000380358 KRTAP5-7Q6L8G8 165 aa1.27□□□□□ -2.21
CHD3-203ENST00000380358 MUC16Q8WXI7 14507 aa1.19□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 44.2 ms