RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 KRTAP19-6Q3LI70 58 aa6.15□□□□□ -1.43
CCDC3-201ENST00000378825 KRTAP4-3Q9BYR4 195 aa6.14□□□□□ -1.43
CCDC3-201ENST00000378825 MUC12Q9UKN1 5478 aa6.13□□□□□ -1.43
CCDC3-201ENST00000378825 DSTQ03001 7570 aaKnown RBP6.02□□□□□ -1.45
CCDC3-201ENST00000378825 MT1GP13640 62 aa6□□□□□ -1.45
CCDC3-201ENST00000378825 CRCT1Q9UGL9 99 aa5.97□□□□□ -1.45
CCDC3-201ENST00000378825 LCE2DQ5TA82 110 aaPredicted RBP5.96□□□□□ -1.46
CCDC3-201ENST00000378825 KRTAP19-4Q3LI73 84 aa5.9□□□□□ -1.46
CCDC3-201ENST00000378825 MACF1Q9UPN3 7388 aaKnown RBP5.84□□□□□ -1.47
CCDC3-201ENST00000378825 KRTAP12-4P60329 112 aa5.82□□□□□ -1.48
CCDC3-201ENST00000378825 KRTAP19-3Q7Z4W3 81 aa5.81□□□□□ -1.48
CCDC3-201ENST00000378825 MT1MQ8N339 61 aa5.81□□□□□ -1.48
CCDC3-201ENST00000378825 SPRR2FQ96RM1 72 aa5.74□□□□□ -1.49
CCDC3-201ENST00000378825 SYNE2Q8WXH0 6885 aaKnown RBP5.71□□□□□ -1.49
CCDC3-201ENST00000378825 SYNE1Q8NF91 8797 aaKnown RBP5.7□□□□□ -1.5
CCDC3-201ENST00000378825 KRTAP4-9Q9BYQ8 210 aa5.68□□□□□ -1.5
CCDC3-201ENST00000378825 LCE3BQ5TA77 95 aa5.64□□□□□ -1.51
CCDC3-201ENST00000378825 MDN1Q9NU22 5596 aa5.62□□□□□ -1.51
CCDC3-201ENST00000378825 LCE5AQ5TCM9 118 aa5.61□□□□□ -1.51
CCDC3-201ENST00000378825 KRTAP9-2Q9BYQ4 174 aa5.43□□□□□ -1.54
CCDC3-201ENST00000378825 KRTAP6-1Q3LI64 71 aa5.4□□□□□ -1.54
CCDC3-201ENST00000378825 OBSCNQ5VST9 7968 aa5.37□□□□□ -1.55
CCDC3-201ENST00000378825 KRTAP9-7A8MTY7 169 aa5.32□□□□□ -1.56
CCDC3-201ENST00000378825 LCE1AQ5T7P2 110 aa5.31□□□□□ -1.56
CCDC3-201ENST00000378825 LCE3DQ9BYE3 92 aa5.26□□□□□ -1.57
CCDC3-201ENST00000378825 MT1AP04731 61 aa5.26□□□□□ -1.57
CCDC3-201ENST00000378825 KRTAP5-5Q701N2 237 aaPredicted RBP5.25□□□□□ -1.57
CCDC3-201ENST00000378825 SPRR2EP22531 72 aa5.23□□□□□ -1.57
CCDC3-201ENST00000378825 SPRR2BP35325 72 aa5.23□□□□□ -1.57
CCDC3-201ENST00000378825 SPRR2AP35326 72 aa5.23□□□□□ -1.57
CCDC3-201ENST00000378825 KRTAP5-9P26371 169 aa5.22□□□□□ -1.57
CCDC3-201ENST00000378825 PRM1P04553 51 aa5.21□□□□□ -1.58
CCDC3-201ENST00000378825 LCE3EQ5T5B0 92 aa5.19□□□□□ -1.58
CCDC3-201ENST00000378825 SPRR2DP22532 72 aa4.99□□□□□ -1.61
CCDC3-201ENST00000378825 KRTAP6-2Q3LI66 62 aa4.96□□□□□ -1.61
CCDC3-201ENST00000378825 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.88□□□□□ -1.63
CCDC3-201ENST00000378825 KRTAP9-4Q9BYQ2 154 aa4.87□□□□□ -1.63
CCDC3-201ENST00000378825 KRTAP6-3Q3LI67 103 aa4.81□□□□□ -1.64
CCDC3-201ENST00000378825 KRTAP9-6A0A140TA67 174 aa4.7□□□□□ -1.66
CCDC3-201ENST00000378825 MT3P25713 68 aa4.64□□□□□ -1.67
CCDC3-201ENST00000378825 NEBP20929 6669 aa4.62□□□□□ -1.67
CCDC3-201ENST00000378825 KRTAP2-2Q9BYT5 123 aa4.56□□□□□ -1.68
CCDC3-201ENST00000378825 KRTAP4-6Q9BYQ5 205 aa4.5□□□□□ -1.69
CCDC3-201ENST00000378825 KRTAP5-4Q6L8H1 288 aa4.49□□□□□ -1.69
CCDC3-201ENST00000378825 MT4P47944 62 aa4.49□□□□□ -1.69
CCDC3-201ENST00000378825 HMCN1Q96RW7 5635 aa4.33□□□□□ -1.72
CCDC3-201ENST00000378825 KRTAP20-2Q3LI61 65 aa4.29□□□□□ -1.72
CCDC3-201ENST00000378825 LCE4AQ5TA78 99 aa4.21□□□□□ -1.74
CCDC3-201ENST00000378825 KRTAP5-2Q701N4 177 aa4.18□□□□□ -1.74
CCDC3-201ENST00000378825 LCE1DQ5T752 114 aa4.18□□□□□ -1.74
CCDC3-201ENST00000378825 MUC5ACP98088 5654 aa4.16□□□□□ -1.74
CCDC3-201ENST00000378825 KRTAP5-3Q6L8H2 238 aa4.06□□□□□ -1.76
CCDC3-201ENST00000378825 KRTAP20-1Q3LI63 56 aa4.01□□□□□ -1.77
CCDC3-201ENST00000378825 LCE1EQ5T753 118 aa4.01□□□□□ -1.77
CCDC3-201ENST00000378825 KRTAP4-11Q9BYQ6 195 aa3.97□□□□□ -1.77
CCDC3-201ENST00000378825 LCE1BQ5T7P3 118 aa3.89□□□□□ -1.79
CCDC3-201ENST00000378825 KRTAP5-10Q6L8G5 202 aa3.83□□□□□ -1.8
CCDC3-201ENST00000378825 KRTAP5-1Q6L8H4 278 aa3.68□□□□□ -1.82
CCDC3-201ENST00000378825 KRTAP4-2Q9BYR5 136 aa3.64□□□□□ -1.83
CCDC3-201ENST00000378825 LCE1CQ5T751 118 aa3.57□□□□□ -1.84
CCDC3-201ENST00000378825 KRTAP4-12Q9BQ66 201 aa3.51□□□□□ -1.85
CCDC3-201ENST00000378825 MUC19Q7Z5P9 8384 aa3.46□□□□□ -1.86
CCDC3-201ENST00000378825 KRTAP21-2Q3LI59 83 aa3.44□□□□□ -1.86
CCDC3-201ENST00000378825 AHNAK2Q8IVF2 5795 aa3.43□□□□□ -1.86
CCDC3-201ENST00000378825 KRTAP9-9Q9BYP9 154 aa3.42□□□□□ -1.86
CCDC3-201ENST00000378825 KRTAP5-8O75690 187 aa3.41□□□□□ -1.86
CCDC3-201ENST00000378825 KRTAP4-4Q9BYR3 166 aa3.35□□□□□ -1.87
CCDC3-201ENST00000378825 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.31□□□□□ -1.88
CCDC3-201ENST00000378825 MUC5BQ9HC84 5762 aaPredicted RBP3.27□□□□□ -1.89
CCDC3-201ENST00000378825 KRTAP5-7Q6L8G8 165 aa3.23□□□□□ -1.89
CCDC3-201ENST00000378825 KRTAP21-1Q3LI58 79 aa3.21□□□□□ -1.9
CCDC3-201ENST00000378825 KRTAP5-11Q6L8G4 156 aa3.06□□□□□ -1.92
CCDC3-201ENST00000378825 GPR98Q8WXG9 6306 aa2.97□□□□□ -1.93
CCDC3-201ENST00000378825 LCE1FQ5T754 118 aa2.83□□□□□ -1.96
CCDC3-201ENST00000378825 PHGR1C9JFL3 82 aa2.67□□□□□ -1.98
CCDC3-201ENST00000378825 AHNAKQ09666 5890 aaKnown RBP2.48□□□□□ -2.01
CCDC3-201ENST00000378825 MUC16Q8WXI7 14507 aa1.83□□□□□ -2.12
Retrieved 77 of 20,778 RNA–protein pairs in 141.7 ms