RNA–Protein interactions for RNA: ENST00000377270.7

FXN-201, Transcript of frataxin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FXN, Length 2,608 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FXN-201ENST00000377270 KRTAP2-2Q9BYT5 123 aa5.22□□□□□ -1.57
FXN-201ENST00000377270 MT1LQ93083 61 aa5.21□□□□□ -1.58
FXN-201ENST00000377270 KRTAP12-4P60329 112 aa5.2□□□□□ -1.58
FXN-201ENST00000377270 KRTAP19-4Q3LI73 84 aa5.16□□□□□ -1.58
FXN-201ENST00000377270 KRTAP6-3Q3LI67 103 aa5.1□□□□□ -1.59
FXN-201ENST00000377270 FCGBPQ9Y6R7 5405 aaPredicted RBP5.09□□□□□ -1.59
FXN-201ENST00000377270 LCE1AQ5T7P2 110 aa5.09□□□□□ -1.6
FXN-201ENST00000377270 MUC12Q9UKN1 5478 aa5.01□□□□□ -1.61
FXN-201ENST00000377270 KRTAP4-3Q9BYR4 195 aa4.95□□□□□ -1.62
FXN-201ENST00000377270 KRTAP19-3Q7Z4W3 81 aa4.93□□□□□ -1.62
FXN-201ENST00000377270 MT1GP13640 62 aa4.91□□□□□ -1.62
FXN-201ENST00000377270 MT1MQ8N339 61 aa4.91□□□□□ -1.62
FXN-201ENST00000377270 LOC100996750A0A140TA64 210 aa4.89□□□□□ -1.63
FXN-201ENST00000377270 MACF1Q9UPN3 7388 aaKnown RBP4.86□□□□□ -1.63
FXN-201ENST00000377270 LCE1EQ5T753 118 aa4.86□□□□□ -1.63
FXN-201ENST00000377270 SPRR2FQ96RM1 72 aa4.85□□□□□ -1.63
FXN-201ENST00000377270 LCE5AQ5TCM9 118 aa4.78□□□□□ -1.64
FXN-201ENST00000377270 KRTAP9-2Q9BYQ4 174 aa4.78□□□□□ -1.64
FXN-201ENST00000377270 DSTQ03001 7570 aaKnown RBP4.78□□□□□ -1.64
FXN-201ENST00000377270 CRCT1Q9UGL9 99 aa4.77□□□□□ -1.65
FXN-201ENST00000377270 PRM1P04553 51 aa4.76□□□□□ -1.65
FXN-201ENST00000377270 SYNE2Q8WXH0 6885 aaKnown RBP4.72□□□□□ -1.65
FXN-201ENST00000377270 KRTAP9-7A8MTY7 169 aa4.71□□□□□ -1.66
FXN-201ENST00000377270 LCE1DQ5T752 114 aa4.65□□□□□ -1.66
FXN-201ENST00000377270 MDN1Q9NU22 5596 aa4.63□□□□□ -1.67
FXN-201ENST00000377270 KRTAP5-5Q701N2 237 aaPredicted RBP4.56□□□□□ -1.68
FXN-201ENST00000377270 SYNE1Q8NF91 8797 aaKnown RBP4.54□□□□□ -1.68
FXN-201ENST00000377270 KRTAP5-9P26371 169 aa4.54□□□□□ -1.68
FXN-201ENST00000377270 KRTAP4-9Q9BYQ8 210 aa4.53□□□□□ -1.68
FXN-201ENST00000377270 LCE3BQ5TA77 95 aa4.46□□□□□ -1.7
FXN-201ENST00000377270 MT1AP04731 61 aa4.45□□□□□ -1.7
FXN-201ENST00000377270 SPRR2EP22531 72 aa4.45□□□□□ -1.7
FXN-201ENST00000377270 SPRR2BP35325 72 aa4.45□□□□□ -1.7
FXN-201ENST00000377270 SPRR2AP35326 72 aa4.45□□□□□ -1.7
FXN-201ENST00000377270 KRTAP6-1Q3LI64 71 aa4.42□□□□□ -1.7
FXN-201ENST00000377270 LCE4AQ5TA78 99 aa4.41□□□□□ -1.7
FXN-201ENST00000377270 LCE3EQ5T5B0 92 aa4.4□□□□□ -1.71
FXN-201ENST00000377270 KRTAP9-4Q9BYQ2 154 aa4.4□□□□□ -1.71
FXN-201ENST00000377270 LCE3DQ9BYE3 92 aa4.37□□□□□ -1.71
FXN-201ENST00000377270 LCE1FQ5T754 118 aa4.36□□□□□ -1.71
FXN-201ENST00000377270 KRTAP9-9Q9BYP9 154 aa4.34□□□□□ -1.72
FXN-201ENST00000377270 SPRR2DP22532 72 aa4.27□□□□□ -1.73
FXN-201ENST00000377270 GPR98Q8WXG9 6306 aa4.26□□□□□ -1.73
FXN-201ENST00000377270 KRTAP6-2Q3LI66 62 aa4.25□□□□□ -1.73
FXN-201ENST00000377270 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.23□□□□□ -1.73
FXN-201ENST00000377270 KRTAP4-12Q9BQ66 201 aa4.23□□□□□ -1.73
FXN-201ENST00000377270 OBSCNQ5VST9 7968 aa4.21□□□□□ -1.74
FXN-201ENST00000377270 KRTAP4-6Q9BYQ5 205 aa4.19□□□□□ -1.74
FXN-201ENST00000377270 KRTAP20-1Q3LI63 56 aa4.03□□□□□ -1.76
FXN-201ENST00000377270 NEBP20929 6669 aa3.98□□□□□ -1.77
FXN-201ENST00000377270 MT3P25713 68 aa3.96□□□□□ -1.78
FXN-201ENST00000377270 MUC5BQ9HC84 5762 aaPredicted RBP3.93□□□□□ -1.78
FXN-201ENST00000377270 KRTAP5-4Q6L8H1 288 aa3.89□□□□□ -1.79
FXN-201ENST00000377270 MT4P47944 62 aa3.76□□□□□ -1.81
FXN-201ENST00000377270 AHNAKQ09666 5890 aaKnown RBP3.69□□□□□ -1.82
FXN-201ENST00000377270 KRTAP20-2Q3LI61 65 aa3.67□□□□□ -1.82
FXN-201ENST00000377270 KRTAP5-7Q6L8G8 165 aa3.65□□□□□ -1.83
FXN-201ENST00000377270 HMCN1Q96RW7 5635 aa3.63□□□□□ -1.83
FXN-201ENST00000377270 KRTAP5-2Q701N4 177 aa3.61□□□□□ -1.83
FXN-201ENST00000377270 KRTAP5-3Q6L8H2 238 aa3.54□□□□□ -1.84
FXN-201ENST00000377270 KRTAP4-11Q9BYQ6 195 aa3.53□□□□□ -1.84
FXN-201ENST00000377270 MUC19Q7Z5P9 8384 aa3.45□□□□□ -1.86
FXN-201ENST00000377270 MUC5ACP98088 5654 aa3.33□□□□□ -1.88
FXN-201ENST00000377270 KRTAP4-2Q9BYR5 136 aa3.32□□□□□ -1.88
FXN-201ENST00000377270 KRTAP5-10Q6L8G5 202 aa3.24□□□□□ -1.89
FXN-201ENST00000377270 LCE1CQ5T751 118 aa3.23□□□□□ -1.89
FXN-201ENST00000377270 LCE1BQ5T7P3 118 aa3.23□□□□□ -1.89
FXN-201ENST00000377270 AHNAK2Q8IVF2 5795 aa3.16□□□□□ -1.9
FXN-201ENST00000377270 KRTAP5-1Q6L8H4 278 aa3.09□□□□□ -1.91
FXN-201ENST00000377270 KRTAP21-1Q3LI58 79 aa3.06□□□□□ -1.92
FXN-201ENST00000377270 KRTAP5-8O75690 187 aa2.94□□□□□ -1.94
FXN-201ENST00000377270 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.89□□□□□ -1.95
FXN-201ENST00000377270 KRTAP21-2Q3LI59 83 aa2.86□□□□□ -1.95
FXN-201ENST00000377270 KRTAP5-11Q6L8G4 156 aa2.65□□□□□ -1.98
FXN-201ENST00000377270 KRTAP4-4Q9BYR3 166 aa2.63□□□□□ -1.99
FXN-201ENST00000377270 PHGR1C9JFL3 82 aa2.3□□□□□ -2.04
FXN-201ENST00000377270 MUC16Q8WXI7 14507 aa1.54□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 5.7 ms