RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 TFF3Q07654 80 aa-0.38□□□□□ -2.47
VPS13A-206ENST00000376646 ATP5EP2Q5VTU8 51 aa-0.38□□□□□ -2.47
VPS13A-206ENST00000376646 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.38□□□□□ -2.47
VPS13A-206ENST00000376646 LINC01549A6NIU2 74 aa-0.39□□□□□ -2.47
VPS13A-206ENST00000376646 WFDC10BQ8IUB3 73 aa-0.39□□□□□ -2.47
VPS13A-206ENST00000376646 SYCP2Q9BX26 1530 aa-0.39□□□□□ -2.47
VPS13A-206ENST00000376646 S100A13Q99584 98 aa-0.39□□□□□ -2.47
VPS13A-206ENST00000376646 M0QY20 66 aa-0.4□□□□□ -2.47
VPS13A-206ENST00000376646 M0QZ58 72 aa-0.4□□□□□ -2.47
VPS13A-206ENST00000376646 SPART-AS1P0CW21 52 aa-0.4□□□□□ -2.47
VPS13A-206ENST00000376646 GNG13Q9P2W3 67 aa-0.4□□□□□ -2.47
VPS13A-206ENST00000376646 ABCC8Q09428 1581 aa-0.4□□□□□ -2.47
VPS13A-206ENST00000376646 ATXN8Q156A1 80 aa-0.4□□□□□ -2.47
VPS13A-206ENST00000376646 LINC00308Q8TCZ7 52 aa-0.4□□□□□ -2.47
VPS13A-206ENST00000376646 LINC01546A6NGU7 62 aa-0.41□□□□□ -2.47
VPS13A-206ENST00000376646 MRPL33O75394 65 aaKnown RBP-0.41□□□□□ -2.47
VPS13A-206ENST00000376646 POLR2KP53803 58 aaKnown RBP-0.41□□□□□ -2.47
VPS13A-206ENST00000376646 ANKARQ7Z5J8 1434 aa-0.41□□□□□ -2.48
VPS13A-206ENST00000376646 IGIPA6NJ69 53 aa-0.41□□□□□ -2.48
VPS13A-206ENST00000376646 ABCA10Q8WWZ4 1543 aa-0.42□□□□□ -2.48
VPS13A-206ENST00000376646 H3BUA1 57 aa-0.42□□□□□ -2.48
VPS13A-206ENST00000376646 NOP10Q9NPE3 64 aaKnown RBP-0.42□□□□□ -2.48
VPS13A-206ENST00000376646 DEFB114Q30KQ6 69 aa-0.43□□□□□ -2.48
VPS13A-206ENST00000376646 LEAP2Q969E1 77 aa-0.43□□□□□ -2.48
VPS13A-206ENST00000376646 SMIM27A0A1W2PRY6 76 aa-0.43□□□□□ -2.48
VPS13A-206ENST00000376646 PDCD5O14737 125 aa-0.44□□□□□ -2.48
VPS13A-206ENST00000376646 ABRACLQ9P1F3 81 aa-0.44□□□□□ -2.48
VPS13A-206ENST00000376646 SMIM5Q71RC9 77 aa-0.44□□□□□ -2.48
VPS13A-206ENST00000376646 SMCO4Q9NRQ5 59 aa-0.44□□□□□ -2.48
VPS13A-206ENST00000376646 RPS29P62273 56 aaKnown RBP-0.45□□□□□ -2.48
VPS13A-206ENST00000376646 FANCD2Q9BXW9 1451 aa-0.46□□□□□ -2.48
VPS13A-206ENST00000376646 PRXQ9BXM0 1461 aa-0.47□□□□□ -2.48
VPS13A-206ENST00000376646 DEFB136Q30KP8 78 aa-0.47□□□□□ -2.48
VPS13A-206ENST00000376646 NMES1Q9C002 83 aa-0.47□□□□□ -2.48
VPS13A-206ENST00000376646 TMEM167BQ9NRX6 74 aa-0.47□□□□□ -2.48
VPS13A-206ENST00000376646 S100ZQ8WXG8 99 aa-0.48□□□□□ -2.49
VPS13A-206ENST00000376646 IQGAP2Q13576 1575 aa-0.49□□□□□ -2.49
VPS13A-206ENST00000376646 A0A087WWC5 75 aa-0.49□□□□□ -2.49
VPS13A-206ENST00000376646 H0YGX0 51 aa-0.49□□□□□ -2.49
VPS13A-206ENST00000376646 A0A096LNI7 61 aa-0.5□□□□□ -2.49
VPS13A-206ENST00000376646 SMIM2Q9BVW6 85 aa-0.5□□□□□ -2.49
VPS13A-206ENST00000376646 PLNP26678 52 aa-0.5□□□□□ -2.49
VPS13A-206ENST00000376646 DEFB131AP59861 70 aa-0.5□□□□□ -2.49
VPS13A-206ENST00000376646 STATHP02808 62 aa-0.51□□□□□ -2.49
VPS13A-206ENST00000376646 SERF2P84101 59 aa-0.52□□□□□ -2.49
VPS13A-206ENST00000376646 TTTY10Q9BZA0 68 aa-0.52□□□□□ -2.49
VPS13A-206ENST00000376646 RPL39P62891 51 aaKnown RBP-0.53□□□□□ -2.49
VPS13A-206ENST00000376646 TOMM7Q9P0U1 55 aa-0.53□□□□□ -2.49
VPS13A-206ENST00000376646 TOP2AP11388 1531 aaKnown RBP-0.53□□□□□ -2.49
VPS13A-206ENST00000376646 NDUFA1O15239 70 aa-0.53□□□□□ -2.49
VPS13A-206ENST00000376646 HTN1P15515 57 aa-0.55□□□□□ -2.5
VPS13A-206ENST00000376646 RPL39LQ96EH5 51 aaKnown RBP-0.55□□□□□ -2.5
VPS13A-206ENST00000376646 CMC2Q9NRP2 79 aa-0.55□□□□□ -2.5
VPS13A-206ENST00000376646 SMIM31A0A1B0GVY4 71 aa-0.57□□□□□ -2.5
VPS13A-206ENST00000376646 DEFB133Q30KQ1 61 aa-0.57□□□□□ -2.5
VPS13A-206ENST00000376646 LINC01590Q5TEZ4 76 aa-0.59□□□□□ -2.5
VPS13A-206ENST00000376646 RHPN1-AS1Q9BWJ2 59 aa-0.59□□□□□ -2.5
VPS13A-206ENST00000376646 SNRPGP15A8MWD9 76 aa-0.62□□□□□ -2.51
VPS13A-206ENST00000376646 LINC01556Q5JQF7 62 aa-0.63□□□□□ -2.51
VPS13A-206ENST00000376646 TOMM5Q8N4H5 51 aa-0.63□□□□□ -2.51
VPS13A-206ENST00000376646 A0A096LPF7 62 aa-0.64□□□□□ -2.51
VPS13A-206ENST00000376646 APELAP0DMC3 54 aa-0.65□□□□□ -2.51
VPS13A-206ENST00000376646 CD52P31358 61 aa-0.65□□□□□ -2.51
VPS13A-206ENST00000376646 DEFB108AA8MXU0 73 aa-0.68□□□□□ -2.52
VPS13A-206ENST00000376646 H3BSH0 61 aa-0.68□□□□□ -2.52
VPS13A-206ENST00000376646 K7EIM0 57 aa-0.7□□□□□ -2.52
VPS13A-206ENST00000376646 ARHGAP5-AS1Q96IT6 56 aa-0.71□□□□□ -2.52
VPS13A-206ENST00000376646 HTN3P15516 51 aa-0.72□□□□□ -2.52
VPS13A-206ENST00000376646 H3BUX3 64 aa-0.72□□□□□ -2.53
VPS13A-206ENST00000376646 PRCDQ00LT1 54 aa-0.73□□□□□ -2.53
VPS13A-206ENST00000376646 RPL39P5Q59GN2 51 aa-0.73□□□□□ -2.53
VPS13A-206ENST00000376646 TMEM167AQ8TBQ9 72 aa-0.75□□□□□ -2.53
VPS13A-206ENST00000376646 GCC2Q8IWJ2 1684 aa-0.75□□□□□ -2.53
VPS13A-206ENST00000376646 SNRPGP62308 76 aaKnown RBP-0.75□□□□□ -2.53
VPS13A-206ENST00000376646 DEFB108BQ8NET1 73 aa-0.79□□□□□ -2.54
VPS13A-206ENST00000376646 Q9Y3F1 56 aa-0.81□□□□□ -2.54
VPS13A-206ENST00000376646 COX14Q96I36 57 aa-0.85□□□□□ -2.55
Retrieved 77 of 20,778 RNA–protein pairs in 82.5 ms