RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 MT1EP04732 61 aa7.16□□□□□ -1.26
UPF3A-202ENST00000375299 KRTAP19-6Q3LI70 58 aa7.02□□□□□ -1.29
UPF3A-202ENST00000375299 CRCT1Q9UGL9 99 aa6.93□□□□□ -1.3
UPF3A-202ENST00000375299 KRTAP9-6A0A140TA67 174 aa6.85□□□□□ -1.31
UPF3A-202ENST00000375299 LOC100996750A0A140TA64 210 aa6.82□□□□□ -1.32
UPF3A-202ENST00000375299 KRTAP4-3Q9BYR4 195 aa6.79□□□□□ -1.32
UPF3A-202ENST00000375299 FCGBPQ9Y6R7 5405 aaPredicted RBP6.77□□□□□ -1.33
UPF3A-202ENST00000375299 MT1GP13640 62 aa6.75□□□□□ -1.33
UPF3A-202ENST00000375299 MT1MQ8N339 61 aa6.67□□□□□ -1.34
UPF3A-202ENST00000375299 MUC12Q9UKN1 5478 aa6.65□□□□□ -1.34
UPF3A-202ENST00000375299 KRTAP19-3Q7Z4W3 81 aa6.64□□□□□ -1.35
UPF3A-202ENST00000375299 KRTAP12-4P60329 112 aa6.61□□□□□ -1.35
UPF3A-202ENST00000375299 MACF1Q9UPN3 7388 aaKnown RBP6.52□□□□□ -1.37
UPF3A-202ENST00000375299 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.43□□□□□ -1.38
UPF3A-202ENST00000375299 LCE5AQ5TCM9 118 aa6.43□□□□□ -1.38
UPF3A-202ENST00000375299 SYNE2Q8WXH0 6885 aaKnown RBP6.4□□□□□ -1.38
UPF3A-202ENST00000375299 SPRR2FQ96RM1 72 aa6.4□□□□□ -1.39
UPF3A-202ENST00000375299 LCE3BQ5TA77 95 aa6.32□□□□□ -1.4
UPF3A-202ENST00000375299 DSTQ03001 7570 aaKnown RBP6.29□□□□□ -1.4
UPF3A-202ENST00000375299 KRTAP4-9Q9BYQ8 210 aa6.23□□□□□ -1.41
UPF3A-202ENST00000375299 MT1AP04731 61 aa6.22□□□□□ -1.41
UPF3A-202ENST00000375299 KRTAP9-7A8MTY7 169 aa6.22□□□□□ -1.41
UPF3A-202ENST00000375299 KRTAP6-1Q3LI64 71 aa6.13□□□□□ -1.43
UPF3A-202ENST00000375299 KRTAP6-3Q3LI67 103 aa6.12□□□□□ -1.43
UPF3A-202ENST00000375299 SYNE1Q8NF91 8797 aaKnown RBP6.11□□□□□ -1.43
UPF3A-202ENST00000375299 LCE3DQ9BYE3 92 aa6.06□□□□□ -1.44
UPF3A-202ENST00000375299 MDN1Q9NU22 5596 aa6.04□□□□□ -1.44
UPF3A-202ENST00000375299 KRTAP5-9P26371 169 aa6.04□□□□□ -1.44
UPF3A-202ENST00000375299 LCE3EQ5T5B0 92 aa6.02□□□□□ -1.45
UPF3A-202ENST00000375299 LCE1AQ5T7P2 110 aa5.99□□□□□ -1.45
UPF3A-202ENST00000375299 KRTAP5-5Q701N2 237 aaPredicted RBP5.96□□□□□ -1.46
UPF3A-202ENST00000375299 PRM1P04553 51 aa5.9□□□□□ -1.46
UPF3A-202ENST00000375299 NEBP20929 6669 aa5.85□□□□□ -1.47
UPF3A-202ENST00000375299 KRTAP4-6Q9BYQ5 205 aa5.84□□□□□ -1.48
UPF3A-202ENST00000375299 SPRR2EP22531 72 aa5.82□□□□□ -1.48
UPF3A-202ENST00000375299 SPRR2BP35325 72 aa5.82□□□□□ -1.48
UPF3A-202ENST00000375299 SPRR2AP35326 72 aa5.82□□□□□ -1.48
UPF3A-202ENST00000375299 KRTAP9-4Q9BYQ2 154 aa5.66□□□□□ -1.5
UPF3A-202ENST00000375299 KRTAP6-2Q3LI66 62 aa5.64□□□□□ -1.51
UPF3A-202ENST00000375299 SPRR2DP22532 72 aa5.61□□□□□ -1.51
UPF3A-202ENST00000375299 KRTAP20-1Q3LI63 56 aa5.48□□□□□ -1.53
UPF3A-202ENST00000375299 MT3P25713 68 aa5.41□□□□□ -1.54
UPF3A-202ENST00000375299 KRTAP2-2Q9BYT5 123 aa5.3□□□□□ -1.56
UPF3A-202ENST00000375299 KRTAP5-4Q6L8H1 288 aa5.18□□□□□ -1.58
UPF3A-202ENST00000375299 OBSCNQ5VST9 7968 aa5.18□□□□□ -1.58
UPF3A-202ENST00000375299 LCE4AQ5TA78 99 aa4.93□□□□□ -1.62
UPF3A-202ENST00000375299 MT4P47944 62 aa4.91□□□□□ -1.62
UPF3A-202ENST00000375299 HMCN1Q96RW7 5635 aa4.88□□□□□ -1.63
UPF3A-202ENST00000375299 LCE1DQ5T752 114 aa4.87□□□□□ -1.63
UPF3A-202ENST00000375299 KRTAP20-2Q3LI61 65 aa4.85□□□□□ -1.63
UPF3A-202ENST00000375299 KRTAP5-2Q701N4 177 aa4.85□□□□□ -1.63
UPF3A-202ENST00000375299 KRTAP4-12Q9BQ66 201 aa4.84□□□□□ -1.64
UPF3A-202ENST00000375299 KRTAP9-9Q9BYP9 154 aa4.77□□□□□ -1.65
UPF3A-202ENST00000375299 MUC5ACP98088 5654 aa4.64□□□□□ -1.67
UPF3A-202ENST00000375299 KRTAP5-3Q6L8H2 238 aa4.63□□□□□ -1.67
UPF3A-202ENST00000375299 AHNAK2Q8IVF2 5795 aa4.49□□□□□ -1.69
UPF3A-202ENST00000375299 KRTAP4-2Q9BYR5 136 aa4.47□□□□□ -1.69
UPF3A-202ENST00000375299 KRTAP4-11Q9BYQ6 195 aa4.42□□□□□ -1.7
UPF3A-202ENST00000375299 KRTAP5-10Q6L8G5 202 aa4.41□□□□□ -1.7
UPF3A-202ENST00000375299 LCE1EQ5T753 118 aa4.39□□□□□ -1.71
UPF3A-202ENST00000375299 GPR98Q8WXG9 6306 aa4.39□□□□□ -1.71
UPF3A-202ENST00000375299 LCE1BQ5T7P3 118 aa4.31□□□□□ -1.72
UPF3A-202ENST00000375299 KRTAP5-1Q6L8H4 278 aa4.31□□□□□ -1.72
UPF3A-202ENST00000375299 LCE1CQ5T751 118 aa4.15□□□□□ -1.75
UPF3A-202ENST00000375299 KRTAP5-7Q6L8G8 165 aa4□□□□□ -1.77
UPF3A-202ENST00000375299 KRTAP5-8O75690 187 aa3.99□□□□□ -1.77
UPF3A-202ENST00000375299 KRTAP21-2Q3LI59 83 aa3.94□□□□□ -1.78
UPF3A-202ENST00000375299 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.92□□□□□ -1.78
UPF3A-202ENST00000375299 KRTAP21-1Q3LI58 79 aa3.76□□□□□ -1.81
UPF3A-202ENST00000375299 MUC5BQ9HC84 5762 aaPredicted RBP3.67□□□□□ -1.82
UPF3A-202ENST00000375299 KRTAP4-4Q9BYR3 166 aa3.59□□□□□ -1.84
UPF3A-202ENST00000375299 KRTAP5-11Q6L8G4 156 aa3.56□□□□□ -1.84
UPF3A-202ENST00000375299 LCE1FQ5T754 118 aa3.55□□□□□ -1.84
UPF3A-202ENST00000375299 AHNAKQ09666 5890 aaKnown RBP3.53□□□□□ -1.84
UPF3A-202ENST00000375299 MUC19Q7Z5P9 8384 aa3.46□□□□□ -1.85
UPF3A-202ENST00000375299 PHGR1C9JFL3 82 aa3.09□□□□□ -1.92
UPF3A-202ENST00000375299 MUC16Q8WXI7 14507 aa2.09□□□□□ -2.07
Retrieved 77 of 20,778 RNA–protein pairs in 89.7 ms