RNA–Protein interactions for RNA: ENST00000372755.7

VCL-202, Transcript of vinculin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCL, Length 6,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-202ENST00000372755 KMT2CQ8NEZ4 4911 aaKnown RBP3.36□□□□□ -1.87
VCL-202ENST00000372755 HYDINQ4G0P3 5121 aa3.32□□□□□ -1.88
VCL-202ENST00000372755 EPPK1P58107 5090 aaKnown RBP3.3□□□□□ -1.88
VCL-202ENST00000372755 LCE5AQ5TCM9 118 aa3.28□□□□□ -1.88
VCL-202ENST00000372755 KRTAP2-3P0C7H8 128 aa3.27□□□□□ -1.89
VCL-202ENST00000372755 KRTAP2-4Q9BYR9 128 aa3.27□□□□□ -1.89
VCL-202ENST00000372755 KRTAP2-1Q9BYU5 128 aa3.27□□□□□ -1.89
VCL-202ENST00000372755 ABCA13Q86UQ4 5058 aa3.26□□□□□ -1.89
VCL-202ENST00000372755 KRTAP19-7Q3SYF9 63 aa3.26□□□□□ -1.89
VCL-202ENST00000372755 PKHD1P08F94 4074 aa3.26□□□□□ -1.89
VCL-202ENST00000372755 FLGP20930 4061 aaPredicted RBP3.24□□□□□ -1.89
VCL-202ENST00000372755 KRTAP20-1Q3LI63 56 aa3.22□□□□□ -1.89
VCL-202ENST00000372755 LPAP08519 4548 aa3.22□□□□□ -1.89
VCL-202ENST00000372755 KRTAP9-6A0A140TA67 174 aa3.22□□□□□ -1.89
VCL-202ENST00000372755 KRTAP4-9Q9BYQ8 210 aa3.2□□□□□ -1.9
VCL-202ENST00000372755 LCE1AQ5T7P2 110 aa3.15□□□□□ -1.9
VCL-202ENST00000372755 LCE2AQ5TA79 106 aaPredicted RBP3.15□□□□□ -1.91
VCL-202ENST00000372755 RNF213Q63HN8 5207 aa3.13□□□□□ -1.91
VCL-202ENST00000372755 TNXBP22105 4242 aa3.13□□□□□ -1.91
VCL-202ENST00000372755 KRTAP9-4Q9BYQ2 154 aa3.1□□□□□ -1.91
VCL-202ENST00000372755 KRTAP6-3Q3LI67 103 aa3.09□□□□□ -1.91
VCL-202ENST00000372755 KRTAP6-2Q3LI66 62 aa3.09□□□□□ -1.91
VCL-202ENST00000372755 LCE4AQ5TA78 99 aa3.08□□□□□ -1.92
VCL-202ENST00000372755 KRTAP6-1Q3LI64 71 aa3.08□□□□□ -1.92
VCL-202ENST00000372755 SYNE1Q8NF91 8797 aaKnown RBP3.07□□□□□ -1.92
VCL-202ENST00000372755 KRTAP9-7A8MTY7 169 aa3.05□□□□□ -1.92
VCL-202ENST00000372755 FAT4Q6V0I7 4981 aa3.04□□□□□ -1.92
VCL-202ENST00000372755 LCE1CQ5T751 118 aa3.03□□□□□ -1.92
VCL-202ENST00000372755 LCE1EQ5T753 118 aa3.03□□□□□ -1.92
VCL-202ENST00000372755 LCE1FQ5T754 118 aa3.03□□□□□ -1.92
VCL-202ENST00000372755 HMCN2Q8NDA2 5059 aa3.01□□□□□ -1.93
VCL-202ENST00000372755 UBR4Q5T4S7 5183 aa3□□□□□ -1.93
VCL-202ENST00000372755 SYNE2Q8WXH0 6885 aaKnown RBP2.97□□□□□ -1.93
VCL-202ENST00000372755 KRTAP2-2Q9BYT5 123 aa2.97□□□□□ -1.93
VCL-202ENST00000372755 KRTAP9-6A8MVA2 160 aa2.94□□□□□ -1.94
VCL-202ENST00000372755 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.9□□□□□ -1.94
VCL-202ENST00000372755 OBSCNQ5VST9 7968 aa2.87□□□□□ -1.95
VCL-202ENST00000372755 MUC2Q02817 5179 aa2.86□□□□□ -1.95
VCL-202ENST00000372755 FSIP2Q5CZC0 6907 aa2.84□□□□□ -1.95
VCL-202ENST00000372755 KRTAP9-9Q9BYP9 154 aa2.75□□□□□ -1.97
VCL-202ENST00000372755 USH2AO75445 5202 aa2.68□□□□□ -1.98
VCL-202ENST00000372755 KRTAP4-11Q9BYQ6 195 aa2.57□□□□□ -2
VCL-202ENST00000372755 KRTAP5-9P26371 169 aa2.49□□□□□ -2.01
VCL-202ENST00000372755 KRTAP20-2Q3LI61 65 aa2.48□□□□□ -2.01
VCL-202ENST00000372755 NEBP20929 6669 aa2.48□□□□□ -2.01
VCL-202ENST00000372755 KRTAP4-6Q9BYQ5 205 aa2.46□□□□□ -2.02
VCL-202ENST00000372755 FCGBPQ9Y6R7 5405 aaPredicted RBP2.44□□□□□ -2.02
VCL-202ENST00000372755 KMT2DO14686 5537 aa2.4□□□□□ -2.03
VCL-202ENST00000372755 SSPOA2VEC9 5147 aa2.38□□□□□ -2.03
VCL-202ENST00000372755 DSTQ03001 7570 aaKnown RBP2.35□□□□□ -2.03
VCL-202ENST00000372755 KRTAP4-4Q9BYR3 166 aa2.35□□□□□ -2.03
VCL-202ENST00000372755 MUC12Q9UKN1 5478 aa2.35□□□□□ -2.03
VCL-202ENST00000372755 MACF1Q9UPN3 7388 aaKnown RBP2.33□□□□□ -2.04
VCL-202ENST00000372755 KRTAP5-4Q6L8H1 288 aa2.32□□□□□ -2.04
VCL-202ENST00000372755 KRTAP4-12Q9BQ66 201 aa2.31□□□□□ -2.04
VCL-202ENST00000372755 KRTAP4-2Q9BYR5 136 aa2.31□□□□□ -2.04
VCL-202ENST00000372755 MUC19Q7Z5P9 8384 aa2.29□□□□□ -2.04
VCL-202ENST00000372755 MDN1Q9NU22 5596 aa2.26□□□□□ -2.05
VCL-202ENST00000372755 GPR98Q8WXG9 6306 aa2.21□□□□□ -2.06
VCL-202ENST00000372755 KRTAP5-5Q701N2 237 aaPredicted RBP2.2□□□□□ -2.06
VCL-202ENST00000372755 KRTAP5-3Q6L8H2 238 aa2.01□□□□□ -2.09
VCL-202ENST00000372755 AHNAK2Q8IVF2 5795 aa1.88□□□□□ -2.11
VCL-202ENST00000372755 MUC5ACP98088 5654 aa1.86□□□□□ -2.11
VCL-202ENST00000372755 HMCN1Q96RW7 5635 aa1.84□□□□□ -2.11
VCL-202ENST00000372755 KRTAP5-2Q701N4 177 aa1.8□□□□□ -2.12
VCL-202ENST00000372755 KRTAP5-8O75690 187 aa1.79□□□□□ -2.12
VCL-202ENST00000372755 KRTAP5-10Q6L8G5 202 aa1.78□□□□□ -2.12
VCL-202ENST00000372755 PHGR1C9JFL3 82 aa1.77□□□□□ -2.13
VCL-202ENST00000372755 MUC5BQ9HC84 5762 aaPredicted RBP1.67□□□□□ -2.14
VCL-202ENST00000372755 KRTAP5-11Q6L8G4 156 aa1.61□□□□□ -2.15
VCL-202ENST00000372755 KRTAP5-1Q6L8H4 278 aa1.58□□□□□ -2.16
VCL-202ENST00000372755 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.55□□□□□ -2.16
VCL-202ENST00000372755 AHNAKQ09666 5890 aaKnown RBP1.52□□□□□ -2.17
VCL-202ENST00000372755 KRTAP21-2Q3LI59 83 aa1.49□□□□□ -2.17
VCL-202ENST00000372755 KRTAP21-1Q3LI58 79 aa1.45□□□□□ -2.18
VCL-202ENST00000372755 KRTAP5-7Q6L8G8 165 aa1.36□□□□□ -2.19
VCL-202ENST00000372755 MUC16Q8WXI7 14507 aa0.99□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 12.5 ms