RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 MUC17Q685J3 4493 aa4.21□□□□□ -1.73
COL5A1-201ENST00000371817 RYR3Q15413 4870 aa4.2□□□□□ -1.74
COL5A1-201ENST00000371817 KRTAP20-1Q3LI63 56 aa4.2□□□□□ -1.74
COL5A1-201ENST00000371817 KRTAP9-6A0A140TA67 174 aa4.17□□□□□ -1.74
COL5A1-201ENST00000371817 LCE5AQ5TCM9 118 aa4.16□□□□□ -1.74
COL5A1-201ENST00000371817 SYNE2Q8WXH0 6885 aaKnown RBP4.12□□□□□ -1.75
COL5A1-201ENST00000371817 KRTAP19-7Q3SYF9 63 aa4.04□□□□□ -1.76
COL5A1-201ENST00000371817 KRTAP19-2Q3LHN2 52 aa4.03□□□□□ -1.76
COL5A1-201ENST00000371817 KRTAP9-7A8MTY7 169 aa4.03□□□□□ -1.76
COL5A1-201ENST00000371817 SYNE1Q8NF91 8797 aaKnown RBP3.98□□□□□ -1.77
COL5A1-201ENST00000371817 KMT2CQ8NEZ4 4911 aaKnown RBP3.97□□□□□ -1.77
COL5A1-201ENST00000371817 LCE1AQ5T7P2 110 aa3.94□□□□□ -1.78
COL5A1-201ENST00000371817 KRTAP2-2Q9BYT5 123 aa3.93□□□□□ -1.78
COL5A1-201ENST00000371817 LCE4AQ5TA78 99 aa3.93□□□□□ -1.78
COL5A1-201ENST00000371817 LCE1CQ5T751 118 aa3.91□□□□□ -1.78
COL5A1-201ENST00000371817 LCE1EQ5T753 118 aa3.91□□□□□ -1.78
COL5A1-201ENST00000371817 LCE1FQ5T754 118 aa3.91□□□□□ -1.78
COL5A1-201ENST00000371817 KRTAP9-6A8MVA2 160 aa3.91□□□□□ -1.78
COL5A1-201ENST00000371817 KRTAP6-1Q3LI64 71 aa3.9□□□□□ -1.78
COL5A1-201ENST00000371817 HYDINQ4G0P3 5121 aa3.88□□□□□ -1.79
COL5A1-201ENST00000371817 KRTAP6-3Q3LI67 103 aa3.87□□□□□ -1.79
COL5A1-201ENST00000371817 KRTAP9-4Q9BYQ2 154 aa3.86□□□□□ -1.79
COL5A1-201ENST00000371817 LCE2AQ5TA79 106 aaPredicted RBP3.75□□□□□ -1.81
COL5A1-201ENST00000371817 PCLOQ9Y6V0 5065 aa3.73□□□□□ -1.81
COL5A1-201ENST00000371817 RYR2Q92736 4967 aa3.73□□□□□ -1.81
COL5A1-201ENST00000371817 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.68□□□□□ -1.82
COL5A1-201ENST00000371817 HERC2O95714 4834 aa3.67□□□□□ -1.82
COL5A1-201ENST00000371817 BIRC6Q9NR09 4857 aa3.64□□□□□ -1.83
COL5A1-201ENST00000371817 KRTAP9-9Q9BYP9 154 aa3.64□□□□□ -1.83
COL5A1-201ENST00000371817 KIAA1109Q2LD37 5005 aa3.61□□□□□ -1.83
COL5A1-201ENST00000371817 KRTAP4-11Q9BYQ6 195 aa3.6□□□□□ -1.83
COL5A1-201ENST00000371817 HMCN2Q8NDA2 5059 aa3.59□□□□□ -1.84
COL5A1-201ENST00000371817 HERC1Q15751 4861 aa3.51□□□□□ -1.85
COL5A1-201ENST00000371817 FSIP2Q5CZC0 6907 aa3.47□□□□□ -1.85
COL5A1-201ENST00000371817 OBSCNQ5VST9 7968 aa3.39□□□□□ -1.87
COL5A1-201ENST00000371817 MUC2Q02817 5179 aa3.27□□□□□ -1.89
COL5A1-201ENST00000371817 EPPK1P58107 5090 aaKnown RBP3.22□□□□□ -1.89
COL5A1-201ENST00000371817 KRTAP20-2Q3LI61 65 aa3.19□□□□□ -1.9
COL5A1-201ENST00000371817 DSTQ03001 7570 aaKnown RBP3.18□□□□□ -1.9
COL5A1-201ENST00000371817 UBR4Q5T4S7 5183 aa3.15□□□□□ -1.91
COL5A1-201ENST00000371817 FAT4Q6V0I7 4981 aa3.14□□□□□ -1.91
COL5A1-201ENST00000371817 RNF213Q63HN8 5207 aa3.09□□□□□ -1.92
COL5A1-201ENST00000371817 KRTAP5-9P26371 169 aa3.08□□□□□ -1.92
COL5A1-201ENST00000371817 KMT2DO14686 5537 aa3.07□□□□□ -1.92
COL5A1-201ENST00000371817 KRTAP4-4Q9BYR3 166 aa3.07□□□□□ -1.92
COL5A1-201ENST00000371817 ABCA13Q86UQ4 5058 aa3.07□□□□□ -1.92
COL5A1-201ENST00000371817 FCGBPQ9Y6R7 5405 aaPredicted RBP3.05□□□□□ -1.92
COL5A1-201ENST00000371817 KRTAP4-6Q9BYQ5 205 aa3.03□□□□□ -1.92
COL5A1-201ENST00000371817 KRTAP5-5Q701N2 237 aaPredicted RBP3.03□□□□□ -1.92
COL5A1-201ENST00000371817 MUC19Q7Z5P9 8384 aa2.99□□□□□ -1.93
COL5A1-201ENST00000371817 KRTAP5-4Q6L8H1 288 aa2.89□□□□□ -1.95
COL5A1-201ENST00000371817 KRTAP4-12Q9BQ66 201 aa2.88□□□□□ -1.95
COL5A1-201ENST00000371817 KRTAP4-2Q9BYR5 136 aa2.88□□□□□ -1.95
COL5A1-201ENST00000371817 NEBP20929 6669 aa2.83□□□□□ -1.96
COL5A1-201ENST00000371817 MACF1Q9UPN3 7388 aaKnown RBP2.82□□□□□ -1.96
COL5A1-201ENST00000371817 MDN1Q9NU22 5596 aa2.58□□□□□ -2
COL5A1-201ENST00000371817 USH2AO75445 5202 aa2.57□□□□□ -2
COL5A1-201ENST00000371817 SSPOA2VEC9 5147 aa2.53□□□□□ -2
COL5A1-201ENST00000371817 KRTAP5-3Q6L8H2 238 aa2.49□□□□□ -2.01
COL5A1-201ENST00000371817 MUC12Q9UKN1 5478 aa2.45□□□□□ -2.02
COL5A1-201ENST00000371817 KRTAP5-10Q6L8G5 202 aa2.36□□□□□ -2.03
COL5A1-201ENST00000371817 MUC5ACP98088 5654 aa2.36□□□□□ -2.03
COL5A1-201ENST00000371817 PHGR1C9JFL3 82 aa2.31□□□□□ -2.04
COL5A1-201ENST00000371817 KRTAP5-2Q701N4 177 aa2.27□□□□□ -2.05
COL5A1-201ENST00000371817 GPR98Q8WXG9 6306 aa2.25□□□□□ -2.05
COL5A1-201ENST00000371817 KRTAP5-8O75690 187 aa2.17□□□□□ -2.06
COL5A1-201ENST00000371817 MUC5BQ9HC84 5762 aaPredicted RBP2.02□□□□□ -2.09
COL5A1-201ENST00000371817 KRTAP21-1Q3LI58 79 aa2.02□□□□□ -2.09
COL5A1-201ENST00000371817 HMCN1Q96RW7 5635 aa1.98□□□□□ -2.09
COL5A1-201ENST00000371817 KRTAP5-1Q6L8H4 278 aa1.98□□□□□ -2.09
COL5A1-201ENST00000371817 KRTAP5-11Q6L8G4 156 aa1.97□□□□□ -2.09
COL5A1-201ENST00000371817 KRTAP21-2Q3LI59 83 aa1.82□□□□□ -2.12
COL5A1-201ENST00000371817 AHNAK2Q8IVF2 5795 aa1.79□□□□□ -2.12
COL5A1-201ENST00000371817 AHNAKQ09666 5890 aaKnown RBP1.7□□□□□ -2.14
COL5A1-201ENST00000371817 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.63□□□□□ -2.15
COL5A1-201ENST00000371817 KRTAP5-7Q6L8G8 165 aa1.62□□□□□ -2.15
COL5A1-201ENST00000371817 MUC16Q8WXI7 14507 aa1.56□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 123.7 ms