RNA–Protein interactions for RNA: ENST00000371748.9

LHX3-202, Transcript of LIM homeobox 3, humanhuman

TSL 1 (best) BASIC

Gene LHX3, Length 2,365 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3-202ENST00000371748 MUC12Q9UKN1 5478 aa6.81□□□□□ -1.32
LHX3-202ENST00000371748 MACF1Q9UPN3 7388 aaKnown RBP6.75□□□□□ -1.33
LHX3-202ENST00000371748 KRTAP19-3Q7Z4W3 81 aa6.69□□□□□ -1.34
LHX3-202ENST00000371748 SPRR2FQ96RM1 72 aa6.68□□□□□ -1.34
LHX3-202ENST00000371748 KRTAP2-3P0C7H8 128 aa6.65□□□□□ -1.35
LHX3-202ENST00000371748 KRTAP4-3Q9BYR4 195 aa6.65□□□□□ -1.35
LHX3-202ENST00000371748 KRTAP2-4Q9BYR9 128 aa6.65□□□□□ -1.35
LHX3-202ENST00000371748 KRTAP2-1Q9BYU5 128 aa6.65□□□□□ -1.35
LHX3-202ENST00000371748 CRCT1Q9UGL9 99 aa6.64□□□□□ -1.35
LHX3-202ENST00000371748 MT1GP13640 62 aa6.63□□□□□ -1.35
LHX3-202ENST00000371748 MT1MQ8N339 61 aa6.62□□□□□ -1.35
LHX3-202ENST00000371748 SYNE2Q8WXH0 6885 aaKnown RBP6.56□□□□□ -1.36
LHX3-202ENST00000371748 LCE5AQ5TCM9 118 aa6.52□□□□□ -1.37
LHX3-202ENST00000371748 LOC100996750A0A140TA64 210 aa6.51□□□□□ -1.37
LHX3-202ENST00000371748 MDN1Q9NU22 5596 aa6.37□□□□□ -1.39
LHX3-202ENST00000371748 KRTAP5-9P26371 169 aa6.37□□□□□ -1.39
LHX3-202ENST00000371748 DSTQ03001 7570 aaKnown RBP6.36□□□□□ -1.39
LHX3-202ENST00000371748 LCE1AQ5T7P2 110 aa6.29□□□□□ -1.4
LHX3-202ENST00000371748 SPRR2EP22531 72 aa6.21□□□□□ -1.42
LHX3-202ENST00000371748 SPRR2BP35325 72 aa6.21□□□□□ -1.42
LHX3-202ENST00000371748 SPRR2AP35326 72 aa6.21□□□□□ -1.42
LHX3-202ENST00000371748 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.14□□□□□ -1.43
LHX3-202ENST00000371748 KRTAP9-6A0A140TA67 174 aa6.09□□□□□ -1.43
LHX3-202ENST00000371748 KRTAP6-3Q3LI67 103 aa6.06□□□□□ -1.44
LHX3-202ENST00000371748 SPRR2DP22532 72 aa5.96□□□□□ -1.46
LHX3-202ENST00000371748 KRTAP6-1Q3LI64 71 aa5.92□□□□□ -1.46
LHX3-202ENST00000371748 KRTAP12-4P60329 112 aa5.91□□□□□ -1.46
LHX3-202ENST00000371748 KRTAP5-5Q701N2 237 aaPredicted RBP5.91□□□□□ -1.46
LHX3-202ENST00000371748 MT1AP04731 61 aa5.88□□□□□ -1.47
LHX3-202ENST00000371748 LCE3BQ5TA77 95 aa5.88□□□□□ -1.47
LHX3-202ENST00000371748 SYNE1Q8NF91 8797 aaKnown RBP5.79□□□□□ -1.48
LHX3-202ENST00000371748 KRTAP4-9Q9BYQ8 210 aa5.69□□□□□ -1.5
LHX3-202ENST00000371748 NEBP20929 6669 aa5.67□□□□□ -1.5
LHX3-202ENST00000371748 KRTAP9-7A8MTY7 169 aa5.66□□□□□ -1.5
LHX3-202ENST00000371748 KRTAP9-4Q9BYQ2 154 aa5.57□□□□□ -1.52
LHX3-202ENST00000371748 LCE3DQ9BYE3 92 aa5.43□□□□□ -1.54
LHX3-202ENST00000371748 KRTAP5-4Q6L8H1 288 aa5.41□□□□□ -1.54
LHX3-202ENST00000371748 KRTAP6-2Q3LI66 62 aa5.38□□□□□ -1.55
LHX3-202ENST00000371748 LCE3EQ5T5B0 92 aa5.37□□□□□ -1.55
LHX3-202ENST00000371748 MT3P25713 68 aa5.3□□□□□ -1.56
LHX3-202ENST00000371748 PRM1P04553 51 aa5.25□□□□□ -1.57
LHX3-202ENST00000371748 MT4P47944 62 aa5.24□□□□□ -1.57
LHX3-202ENST00000371748 KRTAP4-6Q9BYQ5 205 aa5.24□□□□□ -1.57
LHX3-202ENST00000371748 LCE4AQ5TA78 99 aa5.19□□□□□ -1.58
LHX3-202ENST00000371748 KRTAP2-2Q9BYT5 123 aa5.14□□□□□ -1.59
LHX3-202ENST00000371748 OBSCNQ5VST9 7968 aa5.13□□□□□ -1.59
LHX3-202ENST00000371748 KRTAP20-2Q3LI61 65 aa5.09□□□□□ -1.59
LHX3-202ENST00000371748 HMCN1Q96RW7 5635 aa5.04□□□□□ -1.6
LHX3-202ENST00000371748 LCE1DQ5T752 114 aa5.02□□□□□ -1.61
LHX3-202ENST00000371748 KRTAP20-1Q3LI63 56 aa5.02□□□□□ -1.61
LHX3-202ENST00000371748 KRTAP5-2Q701N4 177 aa4.98□□□□□ -1.61
LHX3-202ENST00000371748 KRTAP5-3Q6L8H2 238 aa4.87□□□□□ -1.63
LHX3-202ENST00000371748 LCE1EQ5T753 118 aa4.45□□□□□ -1.7
LHX3-202ENST00000371748 MUC5ACP98088 5654 aa4.42□□□□□ -1.7
LHX3-202ENST00000371748 LCE1BQ5T7P3 118 aa4.35□□□□□ -1.71
LHX3-202ENST00000371748 KRTAP4-11Q9BYQ6 195 aa4.31□□□□□ -1.72
LHX3-202ENST00000371748 KRTAP5-1Q6L8H4 278 aa4.29□□□□□ -1.72
LHX3-202ENST00000371748 KRTAP5-10Q6L8G5 202 aa4.24□□□□□ -1.73
LHX3-202ENST00000371748 KRTAP4-2Q9BYR5 136 aa4.22□□□□□ -1.73
LHX3-202ENST00000371748 AHNAK2Q8IVF2 5795 aa4.22□□□□□ -1.73
LHX3-202ENST00000371748 LCE1CQ5T751 118 aa4.19□□□□□ -1.74
LHX3-202ENST00000371748 KRTAP5-8O75690 187 aa4.14□□□□□ -1.75
LHX3-202ENST00000371748 KRTAP5-7Q6L8G8 165 aa4.01□□□□□ -1.77
LHX3-202ENST00000371748 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.92□□□□□ -1.78
LHX3-202ENST00000371748 KRTAP21-2Q3LI59 83 aa3.84□□□□□ -1.79
LHX3-202ENST00000371748 MUC5BQ9HC84 5762 aaPredicted RBP3.66□□□□□ -1.82
LHX3-202ENST00000371748 GPR98Q8WXG9 6306 aa3.65□□□□□ -1.82
LHX3-202ENST00000371748 KRTAP5-11Q6L8G4 156 aa3.65□□□□□ -1.83
LHX3-202ENST00000371748 KRTAP9-9Q9BYP9 154 aa3.61□□□□□ -1.83
LHX3-202ENST00000371748 KRTAP4-12Q9BQ66 201 aa3.51□□□□□ -1.85
LHX3-202ENST00000371748 KRTAP4-4Q9BYR3 166 aa3.51□□□□□ -1.85
LHX3-202ENST00000371748 LCE1FQ5T754 118 aa3.48□□□□□ -1.85
LHX3-202ENST00000371748 KRTAP21-1Q3LI58 79 aa3.33□□□□□ -1.88
LHX3-202ENST00000371748 MUC19Q7Z5P9 8384 aa3.2□□□□□ -1.9
LHX3-202ENST00000371748 PHGR1C9JFL3 82 aa3.15□□□□□ -1.9
LHX3-202ENST00000371748 AHNAKQ09666 5890 aaKnown RBP2.97□□□□□ -1.93
LHX3-202ENST00000371748 MUC16Q8WXI7 14507 aa2.05□□□□□ -2.08
Retrieved 77 of 20,778 RNA–protein pairs in 73.9 ms