RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 KRTAP19-5Q3LI72 72 aa6.25□□□□□ -1.41
CLN3-203ENST00000357806 LCE3AQ5TA76 89 aa6.22□□□□□ -1.41
CLN3-203ENST00000357806 KRTAP19-3Q7Z4W3 81 aa6.22□□□□□ -1.41
CLN3-203ENST00000357806 KRTAP2-2Q9BYT5 123 aa6.22□□□□□ -1.41
CLN3-203ENST00000357806 KRTAP2-1Q9BYU5 128 aa6.22□□□□□ -1.41
CLN3-203ENST00000357806 LCE3BQ5TA77 95 aa6.2□□□□□ -1.42
CLN3-203ENST00000357806 LCE5AQ5TCM9 118 aa6.2□□□□□ -1.42
CLN3-203ENST00000357806 KRTAP25-1Q3LHN0 102 aa6.09□□□□□ -1.43
CLN3-203ENST00000357806 MT1GP13640 62 aa6.09□□□□□ -1.44
CLN3-203ENST00000357806 PP632Q6XCG6 107 aa6.07□□□□□ -1.44
CLN3-203ENST00000357806 MT1LQ93083 61 aa6.05□□□□□ -1.44
CLN3-203ENST00000357806 KRTAP12-3P60328 96 aa6□□□□□ -1.45
CLN3-203ENST00000357806 MT1MQ8N339 61 aa5.98□□□□□ -1.45
CLN3-203ENST00000357806 DSTQ03001 7570 aaKnown RBP5.97□□□□□ -1.45
CLN3-203ENST00000357806 ROMO1P60602 79 aa5.9□□□□□ -1.46
CLN3-203ENST00000357806 KRTAP23-1A1A580 65 aa5.87□□□□□ -1.47
CLN3-203ENST00000357806 PRAC1Q96KF2 57 aa5.87□□□□□ -1.47
CLN3-203ENST00000357806 KRTAP4-3Q9BYR4 195 aa5.81□□□□□ -1.48
CLN3-203ENST00000357806 KRTAP4-7Q9BYR0 210 aa5.74□□□□□ -1.49
CLN3-203ENST00000357806 KRTAP19-4Q3LI73 84 aa5.69□□□□□ -1.5
CLN3-203ENST00000357806 KRTAP4-9Q9BYQ8 210 aa5.68□□□□□ -1.5
CLN3-203ENST00000357806 KRTAP15-1Q3LI76 137 aa5.67□□□□□ -1.5
CLN3-203ENST00000357806 LCE4AQ5TA78 99 aa5.66□□□□□ -1.5
CLN3-203ENST00000357806 LCE1DQ5T752 114 aa5.59□□□□□ -1.51
CLN3-203ENST00000357806 KRTAP5-4Q6L8H1 288 aa5.58□□□□□ -1.52
CLN3-203ENST00000357806 MT4P47944 62 aa5.56□□□□□ -1.52
CLN3-203ENST00000357806 LCE3CQ5T5A8 94 aa5.53□□□□□ -1.52
CLN3-203ENST00000357806 GPR98Q8WXG9 6306 aa5.47□□□□□ -1.53
CLN3-203ENST00000357806 KRTAP5-5Q701N2 237 aaPredicted RBP5.46□□□□□ -1.53
CLN3-203ENST00000357806 LOC100996750A0A140TA64 210 aa5.44□□□□□ -1.54
CLN3-203ENST00000357806 HMCN1Q96RW7 5635 aa5.41□□□□□ -1.54
CLN3-203ENST00000357806 KRTAP4-6Q9BYQ5 205 aa5.4□□□□□ -1.54
CLN3-203ENST00000357806 H3BS24 57 aa5.37□□□□□ -1.55
CLN3-203ENST00000357806 KRTAP12-4P60329 112 aa5.29□□□□□ -1.56
CLN3-203ENST00000357806 SPRR5A0A1B0GTR4 108 aa5.26□□□□□ -1.57
CLN3-203ENST00000357806 KRTAP20-2Q3LI61 65 aa5.26□□□□□ -1.57
CLN3-203ENST00000357806 KRTAP9-6A8MVA2 160 aa5.2□□□□□ -1.58
CLN3-203ENST00000357806 AHNAK2Q8IVF2 5795 aa5.19□□□□□ -1.58
CLN3-203ENST00000357806 MT1AP04731 61 aa5.16□□□□□ -1.58
CLN3-203ENST00000357806 SYNE1Q8NF91 8797 aaKnown RBP5.16□□□□□ -1.58
CLN3-203ENST00000357806 KRTAP5-10Q6L8G5 202 aa5.15□□□□□ -1.58
CLN3-203ENST00000357806 KRTAP6-1Q3LI64 71 aa5.11□□□□□ -1.59
CLN3-203ENST00000357806 KRTAP5-3Q6L8H2 238 aa5.08□□□□□ -1.6
CLN3-203ENST00000357806 NDUFAF8A1L188 74 aa5□□□□□ -1.61
CLN3-203ENST00000357806 KRTAP9-4Q9BYQ2 154 aa4.95□□□□□ -1.62
CLN3-203ENST00000357806 KRTAP5-7Q6L8G8 165 aa4.94□□□□□ -1.62
CLN3-203ENST00000357806 KRTAP5-2Q701N4 177 aa4.94□□□□□ -1.62
CLN3-203ENST00000357806 KRTAP6-2Q3LI66 62 aa4.84□□□□□ -1.63
CLN3-203ENST00000357806 KRTAP4-11Q9BYQ6 195 aa4.75□□□□□ -1.65
CLN3-203ENST00000357806 LUZP6Q538Z0 58 aa4.74□□□□□ -1.65
CLN3-203ENST00000357806 MT3P25713 68 aa4.71□□□□□ -1.66
CLN3-203ENST00000357806 A0A0A0MQY5 61 aa4.61□□□□□ -1.67
CLN3-203ENST00000357806 KRTAP5-8O75690 187 aa4.58□□□□□ -1.68
CLN3-203ENST00000357806 OBSCNQ5VST9 7968 aa4.53□□□□□ -1.68
CLN3-203ENST00000357806 KRTAP5-1Q6L8H4 278 aa4.37□□□□□ -1.71
CLN3-203ENST00000357806 KRTAP9-9Q9BYP9 154 aa4.31□□□□□ -1.72
CLN3-203ENST00000357806 MUC5ACP98088 5654 aa4.28□□□□□ -1.72
CLN3-203ENST00000357806 LCE1EQ5T753 118 aa4.28□□□□□ -1.72
CLN3-203ENST00000357806 INE1O15225 51 aa4.27□□□□□ -1.73
CLN3-203ENST00000357806 MUC5BQ9HC84 5762 aaPredicted RBP4.26□□□□□ -1.73
CLN3-203ENST00000357806 AHNAKQ09666 5890 aaKnown RBP4.23□□□□□ -1.73
CLN3-203ENST00000357806 LCE3DQ9BYE3 92 aa4.04□□□□□ -1.76
CLN3-203ENST00000357806 KRTAP4-2Q9BYR5 136 aa4.01□□□□□ -1.77
CLN3-203ENST00000357806 LCE1BQ5T7P3 118 aa4□□□□□ -1.77
CLN3-203ENST00000357806 LCE1CQ5T751 118 aa3.97□□□□□ -1.77
CLN3-203ENST00000357806 LCE3EQ5T5B0 92 aa3.83□□□□□ -1.8
CLN3-203ENST00000357806 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.65□□□□□ -1.83
CLN3-203ENST00000357806 KRTAP5-11Q6L8G4 156 aa3.59□□□□□ -1.84
CLN3-203ENST00000357806 KRTAP4-12Q9BQ66 201 aa3.54□□□□□ -1.84
CLN3-203ENST00000357806 LCE1FQ5T754 118 aa3.44□□□□□ -1.86
CLN3-203ENST00000357806 KRTAP21-2Q3LI59 83 aa3.36□□□□□ -1.87
CLN3-203ENST00000357806 PHGR1C9JFL3 82 aa3.08□□□□□ -1.92
CLN3-203ENST00000357806 PRM1P04553 51 aa3.07□□□□□ -1.92
CLN3-203ENST00000357806 KRTAP4-4Q9BYR3 166 aa3.03□□□□□ -1.93
CLN3-203ENST00000357806 MUC19Q7Z5P9 8384 aa2.77□□□□□ -1.97
CLN3-203ENST00000357806 KRTAP21-1Q3LI58 79 aa2.27□□□□□ -2.05
CLN3-203ENST00000357806 MUC16Q8WXI7 14507 aa1.99□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 73.5 ms