RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 MACF1Q9UPN3 7388 aaKnown RBP5.46□□□□□ -1.54
RTN3-205ENST00000356000 KRTAP20-1Q3LI63 56 aa5.45□□□□□ -1.54
RTN3-205ENST00000356000 KRTAP5-9P26371 169 aa5.43□□□□□ -1.54
RTN3-205ENST00000356000 NEBP20929 6669 aa5.38□□□□□ -1.55
RTN3-205ENST00000356000 SYNE2Q8WXH0 6885 aaKnown RBP5.31□□□□□ -1.56
RTN3-205ENST00000356000 KRTAP12-4P60329 112 aa5.27□□□□□ -1.57
RTN3-205ENST00000356000 KRTAP4-7Q9BYR0 210 aa5.24□□□□□ -1.57
RTN3-205ENST00000356000 KRTAP19-4Q3LI73 84 aa5.19□□□□□ -1.58
RTN3-205ENST00000356000 KRTAP2-2Q9BYT5 123 aa5.1□□□□□ -1.59
RTN3-205ENST00000356000 KRTAP19-7Q3SYF9 63 aa5.08□□□□□ -1.6
RTN3-205ENST00000356000 SPRR2EP22531 72 aa5.08□□□□□ -1.6
RTN3-205ENST00000356000 SPRR2BP35325 72 aa5.08□□□□□ -1.6
RTN3-205ENST00000356000 SPRR2AP35326 72 aa5.08□□□□□ -1.6
RTN3-205ENST00000356000 KRTAP4-8A0A0G2JLE6 195 aa5.07□□□□□ -1.6
RTN3-205ENST00000356000 KRTAP4-8Q9BYQ9 185 aa5.07□□□□□ -1.6
RTN3-205ENST00000356000 LCE1AQ5T7P2 110 aa5.04□□□□□ -1.6
RTN3-205ENST00000356000 SPRR2FQ96RM1 72 aa5.04□□□□□ -1.6
RTN3-205ENST00000356000 MT1LQ93083 61 aa4.99□□□□□ -1.61
RTN3-205ENST00000356000 KMT2DO14686 5537 aa4.99□□□□□ -1.61
RTN3-205ENST00000356000 MUC12Q9UKN1 5478 aa4.97□□□□□ -1.61
RTN3-205ENST00000356000 SPRR2DP22532 72 aa4.94□□□□□ -1.62
RTN3-205ENST00000356000 MT1EP04732 61 aa4.86□□□□□ -1.63
RTN3-205ENST00000356000 MDN1Q9NU22 5596 aa4.86□□□□□ -1.63
RTN3-205ENST00000356000 LOC100996750A0A140TA64 210 aa4.84□□□□□ -1.63
RTN3-205ENST00000356000 LCE3BQ5TA77 95 aa4.82□□□□□ -1.64
RTN3-205ENST00000356000 PRM1P04553 51 aa4.77□□□□□ -1.65
RTN3-205ENST00000356000 MT1GP13640 62 aa4.73□□□□□ -1.65
RTN3-205ENST00000356000 KRTAP5-5Q701N2 237 aaPredicted RBP4.7□□□□□ -1.66
RTN3-205ENST00000356000 KRTAP4-3Q9BYR4 195 aa4.67□□□□□ -1.66
RTN3-205ENST00000356000 MT1AP04731 61 aa4.66□□□□□ -1.66
RTN3-205ENST00000356000 KRTAP4-9Q9BYQ8 210 aa4.64□□□□□ -1.67
RTN3-205ENST00000356000 LCE3EQ5T5B0 92 aa4.59□□□□□ -1.67
RTN3-205ENST00000356000 LCE3DQ9BYE3 92 aa4.57□□□□□ -1.68
RTN3-205ENST00000356000 SYNE1Q8NF91 8797 aaKnown RBP4.56□□□□□ -1.68
RTN3-205ENST00000356000 LCE5AQ5TCM9 118 aa4.56□□□□□ -1.68
RTN3-205ENST00000356000 LCE4AQ5TA78 99 aa4.53□□□□□ -1.68
RTN3-205ENST00000356000 KRTAP19-3Q7Z4W3 81 aa4.52□□□□□ -1.69
RTN3-205ENST00000356000 GPR98Q8WXG9 6306 aa4.49□□□□□ -1.69
RTN3-205ENST00000356000 MT1MQ8N339 61 aa4.48□□□□□ -1.69
RTN3-205ENST00000356000 LCE1EQ5T753 118 aa4.43□□□□□ -1.7
RTN3-205ENST00000356000 KRTAP6-2Q3LI66 62 aa4.37□□□□□ -1.71
RTN3-205ENST00000356000 LCE1DQ5T752 114 aa4.35□□□□□ -1.71
RTN3-205ENST00000356000 KRTAP5-4Q6L8H1 288 aa4.31□□□□□ -1.72
RTN3-205ENST00000356000 KRTAP6-1Q3LI64 71 aa4.26□□□□□ -1.73
RTN3-205ENST00000356000 KRTAP4-6Q9BYQ5 205 aa4.25□□□□□ -1.73
RTN3-205ENST00000356000 KRTAP5-10Q6L8G5 202 aa4.25□□□□□ -1.73
RTN3-205ENST00000356000 KRTAP5-7Q6L8G8 165 aa4.22□□□□□ -1.73
RTN3-205ENST00000356000 MT4P47944 62 aa4.19□□□□□ -1.74
RTN3-205ENST00000356000 AHNAK2Q8IVF2 5795 aa4.15□□□□□ -1.75
RTN3-205ENST00000356000 HMCN1Q96RW7 5635 aa4.13□□□□□ -1.75
RTN3-205ENST00000356000 KRTAP5-3Q6L8H2 238 aa4.06□□□□□ -1.76
RTN3-205ENST00000356000 DSTQ03001 7570 aaKnown RBP4.04□□□□□ -1.76
RTN3-205ENST00000356000 KRTAP20-2Q3LI61 65 aa4.01□□□□□ -1.77
RTN3-205ENST00000356000 OBSCNQ5VST9 7968 aa4.01□□□□□ -1.77
RTN3-205ENST00000356000 KRTAP9-4Q9BYQ2 154 aa3.85□□□□□ -1.79
RTN3-205ENST00000356000 LCE1FQ5T754 118 aa3.77□□□□□ -1.81
RTN3-205ENST00000356000 KRTAP5-2Q701N4 177 aa3.74□□□□□ -1.81
RTN3-205ENST00000356000 KRTAP4-11Q9BYQ6 195 aa3.71□□□□□ -1.82
RTN3-205ENST00000356000 MT3P25713 68 aa3.68□□□□□ -1.82
RTN3-205ENST00000356000 AHNAKQ09666 5890 aaKnown RBP3.67□□□□□ -1.82
RTN3-205ENST00000356000 KRTAP5-8O75690 187 aa3.58□□□□□ -1.84
RTN3-205ENST00000356000 KRTAP4-12Q9BQ66 201 aa3.56□□□□□ -1.84
RTN3-205ENST00000356000 KRTAP9-9Q9BYP9 154 aa3.53□□□□□ -1.84
RTN3-205ENST00000356000 MUC5BQ9HC84 5762 aaPredicted RBP3.49□□□□□ -1.85
RTN3-205ENST00000356000 MUC5ACP98088 5654 aa3.48□□□□□ -1.85
RTN3-205ENST00000356000 KRTAP5-1Q6L8H4 278 aa3.31□□□□□ -1.88
RTN3-205ENST00000356000 KRTAP4-2Q9BYR5 136 aa3.26□□□□□ -1.89
RTN3-205ENST00000356000 KRTAP21-1Q3LI58 79 aa3.13□□□□□ -1.91
RTN3-205ENST00000356000 MUC19Q7Z5P9 8384 aa3.01□□□□□ -1.93
RTN3-205ENST00000356000 LCE1CQ5T751 118 aa3□□□□□ -1.93
RTN3-205ENST00000356000 LCE1BQ5T7P3 118 aa3□□□□□ -1.93
RTN3-205ENST00000356000 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.73□□□□□ -1.97
RTN3-205ENST00000356000 KRTAP5-11Q6L8G4 156 aa2.73□□□□□ -1.97
RTN3-205ENST00000356000 KRTAP21-2Q3LI59 83 aa2.72□□□□□ -1.97
RTN3-205ENST00000356000 KRTAP4-4Q9BYR3 166 aa2.48□□□□□ -2.01
RTN3-205ENST00000356000 PHGR1C9JFL3 82 aa2.45□□□□□ -2.02
RTN3-205ENST00000356000 MUC16Q8WXI7 14507 aa1.58□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 111.1 ms