RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 MUC17Q685J3 4493 aa5.51□□□□□ -1.53
COL18A1-202ENST00000355480 FLGP20930 4061 aaPredicted RBP5.5□□□□□ -1.53
COL18A1-202ENST00000355480 KRTAP4-3Q9BYR4 195 aa5.48□□□□□ -1.53
COL18A1-202ENST00000355480 LCE1BQ5T7P3 118 aa5.48□□□□□ -1.53
COL18A1-202ENST00000355480 LCE1DQ5T752 114 aa5.45□□□□□ -1.54
COL18A1-202ENST00000355480 PRM1P04553 51 aa5.43□□□□□ -1.54
COL18A1-202ENST00000355480 ABCA13Q86UQ4 5058 aa5.38□□□□□ -1.55
COL18A1-202ENST00000355480 KRTAP9-6A0A140TA67 174 aa5.33□□□□□ -1.56
COL18A1-202ENST00000355480 SYNE1Q8NF91 8797 aaKnown RBP5.31□□□□□ -1.56
COL18A1-202ENST00000355480 LCE2AQ5TA79 106 aaPredicted RBP5.26□□□□□ -1.57
COL18A1-202ENST00000355480 MT1AP04731 61 aa5.25□□□□□ -1.57
COL18A1-202ENST00000355480 KRTAP19-7Q3SYF9 63 aa5.24□□□□□ -1.57
COL18A1-202ENST00000355480 FSIP2Q5CZC0 6907 aa5.21□□□□□ -1.58
COL18A1-202ENST00000355480 KRTAP20-1Q3LI63 56 aa5.16□□□□□ -1.58
COL18A1-202ENST00000355480 RNF213Q63HN8 5207 aa5.16□□□□□ -1.58
COL18A1-202ENST00000355480 LCE5AQ5TCM9 118 aa5.14□□□□□ -1.59
COL18A1-202ENST00000355480 KRTAP4-9Q9BYQ8 210 aa5.14□□□□□ -1.59
COL18A1-202ENST00000355480 UBR4Q5T4S7 5183 aa5.14□□□□□ -1.59
COL18A1-202ENST00000355480 FAT4Q6V0I7 4981 aa5.14□□□□□ -1.59
COL18A1-202ENST00000355480 KRTAP2-3P0C7H8 128 aa5.12□□□□□ -1.59
COL18A1-202ENST00000355480 KRTAP2-4Q9BYR9 128 aa5.12□□□□□ -1.59
COL18A1-202ENST00000355480 KRTAP2-1Q9BYU5 128 aa5.12□□□□□ -1.59
COL18A1-202ENST00000355480 HMCN2Q8NDA2 5059 aa5.07□□□□□ -1.6
COL18A1-202ENST00000355480 KRTAP9-7A8MTY7 169 aa5.06□□□□□ -1.6
COL18A1-202ENST00000355480 MUC2Q02817 5179 aa5.04□□□□□ -1.6
COL18A1-202ENST00000355480 SYNE2Q8WXH0 6885 aaKnown RBP5□□□□□ -1.61
COL18A1-202ENST00000355480 LCE1AQ5T7P2 110 aa4.98□□□□□ -1.61
COL18A1-202ENST00000355480 KRTAP6-3Q3LI67 103 aa4.97□□□□□ -1.61
COL18A1-202ENST00000355480 KRTAP6-2Q3LI66 62 aa4.91□□□□□ -1.62
COL18A1-202ENST00000355480 KRTAP6-1Q3LI64 71 aa4.9□□□□□ -1.62
COL18A1-202ENST00000355480 OBSCNQ5VST9 7968 aa4.86□□□□□ -1.63
COL18A1-202ENST00000355480 KRTAP9-4Q9BYQ2 154 aa4.84□□□□□ -1.63
COL18A1-202ENST00000355480 LCE4AQ5TA78 99 aa4.83□□□□□ -1.64
COL18A1-202ENST00000355480 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.82□□□□□ -1.64
COL18A1-202ENST00000355480 KRTAP9-6A8MVA2 160 aa4.82□□□□□ -1.64
COL18A1-202ENST00000355480 KRTAP2-2Q9BYT5 123 aa4.76□□□□□ -1.65
COL18A1-202ENST00000355480 LCE1CQ5T751 118 aa4.72□□□□□ -1.65
COL18A1-202ENST00000355480 LCE1EQ5T753 118 aa4.72□□□□□ -1.65
COL18A1-202ENST00000355480 LCE1FQ5T754 118 aa4.72□□□□□ -1.65
COL18A1-202ENST00000355480 USH2AO75445 5202 aa4.42□□□□□ -1.7
COL18A1-202ENST00000355480 FCGBPQ9Y6R7 5405 aaPredicted RBP4.37□□□□□ -1.71
COL18A1-202ENST00000355480 KRTAP9-9Q9BYP9 154 aa4.33□□□□□ -1.72
COL18A1-202ENST00000355480 DSTQ03001 7570 aaKnown RBP4.31□□□□□ -1.72
COL18A1-202ENST00000355480 KMT2DO14686 5537 aa4.25□□□□□ -1.73
COL18A1-202ENST00000355480 MACF1Q9UPN3 7388 aaKnown RBP4.23□□□□□ -1.73
COL18A1-202ENST00000355480 NEBP20929 6669 aa4.16□□□□□ -1.74
COL18A1-202ENST00000355480 KRTAP5-9P26371 169 aa4.09□□□□□ -1.75
COL18A1-202ENST00000355480 KRTAP4-6Q9BYQ5 205 aa4.08□□□□□ -1.76
COL18A1-202ENST00000355480 KRTAP4-11Q9BYQ6 195 aa4.01□□□□□ -1.77
COL18A1-202ENST00000355480 KRTAP20-2Q3LI61 65 aa4□□□□□ -1.77
COL18A1-202ENST00000355480 SSPOA2VEC9 5147 aa3.96□□□□□ -1.78
COL18A1-202ENST00000355480 MUC19Q7Z5P9 8384 aa3.88□□□□□ -1.79
COL18A1-202ENST00000355480 MDN1Q9NU22 5596 aa3.85□□□□□ -1.79
COL18A1-202ENST00000355480 KRTAP4-4Q9BYR3 166 aa3.79□□□□□ -1.8
COL18A1-202ENST00000355480 MUC12Q9UKN1 5478 aa3.77□□□□□ -1.81
COL18A1-202ENST00000355480 GPR98Q8WXG9 6306 aa3.77□□□□□ -1.81
COL18A1-202ENST00000355480 KRTAP4-12Q9BQ66 201 aa3.76□□□□□ -1.81
COL18A1-202ENST00000355480 KRTAP4-2Q9BYR5 136 aa3.76□□□□□ -1.81
COL18A1-202ENST00000355480 KRTAP5-4Q6L8H1 288 aa3.68□□□□□ -1.82
COL18A1-202ENST00000355480 KRTAP5-5Q701N2 237 aaPredicted RBP3.6□□□□□ -1.83
COL18A1-202ENST00000355480 MUC5ACP98088 5654 aa3.25□□□□□ -1.89
COL18A1-202ENST00000355480 KRTAP5-3Q6L8H2 238 aa3.24□□□□□ -1.89
COL18A1-202ENST00000355480 HMCN1Q96RW7 5635 aa3.08□□□□□ -1.92
COL18A1-202ENST00000355480 AHNAK2Q8IVF2 5795 aa3.03□□□□□ -1.92
COL18A1-202ENST00000355480 KRTAP5-8O75690 187 aa2.99□□□□□ -1.93
COL18A1-202ENST00000355480 PHGR1C9JFL3 82 aa2.84□□□□□ -1.95
COL18A1-202ENST00000355480 KRTAP5-10Q6L8G5 202 aa2.81□□□□□ -1.96
COL18A1-202ENST00000355480 KRTAP5-2Q701N4 177 aa2.72□□□□□ -1.97
COL18A1-202ENST00000355480 MUC5BQ9HC84 5762 aaPredicted RBP2.69□□□□□ -1.98
COL18A1-202ENST00000355480 AHNAKQ09666 5890 aaKnown RBP2.59□□□□□ -1.99
COL18A1-202ENST00000355480 KRTAP5-11Q6L8G4 156 aa2.55□□□□□ -2
COL18A1-202ENST00000355480 KRTAP5-1Q6L8H4 278 aa2.53□□□□□ -2
COL18A1-202ENST00000355480 KRTAP21-2Q3LI59 83 aa2.39□□□□□ -2.03
COL18A1-202ENST00000355480 KRTAP21-1Q3LI58 79 aa2.2□□□□□ -2.06
COL18A1-202ENST00000355480 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.14□□□□□ -2.07
COL18A1-202ENST00000355480 KRTAP5-7Q6L8G8 165 aa2.03□□□□□ -2.08
COL18A1-202ENST00000355480 MUC16Q8WXI7 14507 aa1.62□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 12.5 ms