RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 KRTAP2-4Q9BYR9 128 aa7.29□□□□□ -1.24
SHMT1-202ENST00000352886 KRTAP2-1Q9BYU5 128 aa7.29□□□□□ -1.24
SHMT1-202ENST00000352886 MUC12Q9UKN1 5478 aa7.23□□□□□ -1.25
SHMT1-202ENST00000352886 KRTAP4-3Q9BYR4 195 aa7.2□□□□□ -1.26
SHMT1-202ENST00000352886 KRTAP19-3Q7Z4W3 81 aa7.18□□□□□ -1.26
SHMT1-202ENST00000352886 MT1MQ8N339 61 aa7.14□□□□□ -1.27
SHMT1-202ENST00000352886 LOC100996750A0A140TA64 210 aa7.13□□□□□ -1.27
SHMT1-202ENST00000352886 MT1GP13640 62 aa7.13□□□□□ -1.27
SHMT1-202ENST00000352886 SPRR2FQ96RM1 72 aa7.01□□□□□ -1.29
SHMT1-202ENST00000352886 MACF1Q9UPN3 7388 aaKnown RBP6.97□□□□□ -1.29
SHMT1-202ENST00000352886 LCE5AQ5TCM9 118 aa6.95□□□□□ -1.3
SHMT1-202ENST00000352886 CRCT1Q9UGL9 99 aa6.93□□□□□ -1.3
SHMT1-202ENST00000352886 DSTQ03001 7570 aaKnown RBP6.86□□□□□ -1.31
SHMT1-202ENST00000352886 KRTAP9-2Q9BYQ4 174 aa6.76□□□□□ -1.33
SHMT1-202ENST00000352886 SYNE2Q8WXH0 6885 aaKnown RBP6.74□□□□□ -1.33
SHMT1-202ENST00000352886 MDN1Q9NU22 5596 aa6.61□□□□□ -1.35
SHMT1-202ENST00000352886 KRTAP5-9P26371 169 aa6.56□□□□□ -1.36
SHMT1-202ENST00000352886 LCE1AQ5T7P2 110 aa6.55□□□□□ -1.36
SHMT1-202ENST00000352886 LCE3BQ5TA77 95 aa6.51□□□□□ -1.37
SHMT1-202ENST00000352886 KRTAP6-1Q3LI64 71 aa6.45□□□□□ -1.38
SHMT1-202ENST00000352886 SPRR2EP22531 72 aa6.42□□□□□ -1.38
SHMT1-202ENST00000352886 SPRR2BP35325 72 aa6.42□□□□□ -1.38
SHMT1-202ENST00000352886 SPRR2AP35326 72 aa6.42□□□□□ -1.38
SHMT1-202ENST00000352886 KRTAP12-4P60329 112 aa6.41□□□□□ -1.38
SHMT1-202ENST00000352886 MT1AP04731 61 aa6.39□□□□□ -1.39
SHMT1-202ENST00000352886 KRTAP5-5Q701N2 237 aaPredicted RBP6.34□□□□□ -1.4
SHMT1-202ENST00000352886 KRTAP4-9Q9BYQ8 210 aa6.33□□□□□ -1.4
SHMT1-202ENST00000352886 KRTAP9-6A0A140TA67 174 aa6.28□□□□□ -1.4
SHMT1-202ENST00000352886 SYNE1Q8NF91 8797 aaKnown RBP6.28□□□□□ -1.4
SHMT1-202ENST00000352886 SPRR2DP22532 72 aa6.15□□□□□ -1.43
SHMT1-202ENST00000352886 LCE3DQ9BYE3 92 aa6.09□□□□□ -1.43
SHMT1-202ENST00000352886 KRTAP6-3Q3LI67 103 aa6.07□□□□□ -1.44
SHMT1-202ENST00000352886 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.05□□□□□ -1.44
SHMT1-202ENST00000352886 KRTAP9-4Q9BYQ2 154 aa6.03□□□□□ -1.44
SHMT1-202ENST00000352886 LCE3EQ5T5B0 92 aa5.99□□□□□ -1.45
SHMT1-202ENST00000352886 KRTAP6-2Q3LI66 62 aa5.81□□□□□ -1.48
SHMT1-202ENST00000352886 KRTAP9-7A8MTY7 169 aa5.75□□□□□ -1.49
SHMT1-202ENST00000352886 MT3P25713 68 aa5.75□□□□□ -1.49
SHMT1-202ENST00000352886 PRM1P04553 51 aa5.72□□□□□ -1.49
SHMT1-202ENST00000352886 NEBP20929 6669 aa5.65□□□□□ -1.5
SHMT1-202ENST00000352886 KRTAP5-4Q6L8H1 288 aa5.65□□□□□ -1.51
SHMT1-202ENST00000352886 OBSCNQ5VST9 7968 aa5.64□□□□□ -1.51
SHMT1-202ENST00000352886 KRTAP4-6Q9BYQ5 205 aa5.45□□□□□ -1.54
SHMT1-202ENST00000352886 MT4P47944 62 aa5.42□□□□□ -1.54
SHMT1-202ENST00000352886 LCE4AQ5TA78 99 aa5.33□□□□□ -1.56
SHMT1-202ENST00000352886 KRTAP20-2Q3LI61 65 aa5.31□□□□□ -1.56
SHMT1-202ENST00000352886 KRTAP5-2Q701N4 177 aa5.25□□□□□ -1.57
SHMT1-202ENST00000352886 HMCN1Q96RW7 5635 aa5.17□□□□□ -1.58
SHMT1-202ENST00000352886 LCE1DQ5T752 114 aa5.12□□□□□ -1.59
SHMT1-202ENST00000352886 KRTAP2-2Q9BYT5 123 aa5.11□□□□□ -1.59
SHMT1-202ENST00000352886 KRTAP5-3Q6L8H2 238 aa5.06□□□□□ -1.6
SHMT1-202ENST00000352886 KRTAP20-1Q3LI63 56 aa5.05□□□□□ -1.6
SHMT1-202ENST00000352886 MUC5ACP98088 5654 aa4.83□□□□□ -1.64
SHMT1-202ENST00000352886 LCE1EQ5T753 118 aa4.75□□□□□ -1.65
SHMT1-202ENST00000352886 LCE1BQ5T7P3 118 aa4.66□□□□□ -1.66
SHMT1-202ENST00000352886 KRTAP5-10Q6L8G5 202 aa4.51□□□□□ -1.69
SHMT1-202ENST00000352886 KRTAP4-2Q9BYR5 136 aa4.5□□□□□ -1.69
SHMT1-202ENST00000352886 KRTAP5-1Q6L8H4 278 aa4.48□□□□□ -1.69
SHMT1-202ENST00000352886 LCE1CQ5T751 118 aa4.48□□□□□ -1.69
SHMT1-202ENST00000352886 KRTAP4-11Q9BYQ6 195 aa4.42□□□□□ -1.7
SHMT1-202ENST00000352886 KRTAP5-8O75690 187 aa4.23□□□□□ -1.73
SHMT1-202ENST00000352886 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.22□□□□□ -1.73
SHMT1-202ENST00000352886 AHNAK2Q8IVF2 5795 aa4.19□□□□□ -1.74
SHMT1-202ENST00000352886 KRTAP21-2Q3LI59 83 aa4.17□□□□□ -1.74
SHMT1-202ENST00000352886 KRTAP5-7Q6L8G8 165 aa4.15□□□□□ -1.74
SHMT1-202ENST00000352886 GPR98Q8WXG9 6306 aa3.98□□□□□ -1.77
SHMT1-202ENST00000352886 KRTAP5-11Q6L8G4 156 aa3.86□□□□□ -1.79
SHMT1-202ENST00000352886 KRTAP4-4Q9BYR3 166 aa3.8□□□□□ -1.8
SHMT1-202ENST00000352886 MUC5BQ9HC84 5762 aaPredicted RBP3.75□□□□□ -1.81
SHMT1-202ENST00000352886 KRTAP4-12Q9BQ66 201 aa3.66□□□□□ -1.82
SHMT1-202ENST00000352886 KRTAP21-1Q3LI58 79 aa3.65□□□□□ -1.83
SHMT1-202ENST00000352886 KRTAP9-9Q9BYP9 154 aa3.61□□□□□ -1.83
SHMT1-202ENST00000352886 LCE1FQ5T754 118 aa3.61□□□□□ -1.83
SHMT1-202ENST00000352886 MUC19Q7Z5P9 8384 aa3.49□□□□□ -1.85
SHMT1-202ENST00000352886 PHGR1C9JFL3 82 aa3.34□□□□□ -1.87
SHMT1-202ENST00000352886 AHNAKQ09666 5890 aaKnown RBP3.24□□□□□ -1.89
SHMT1-202ENST00000352886 MUC16Q8WXI7 14507 aa2.19□□□□□ -2.06
Retrieved 77 of 20,778 RNA–protein pairs in 6.2 ms