RNA–Protein interactions for RNA: ENST00000347635.8

NUP50-201, Transcript of nucleoporin 50, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP50, Length 5,233 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-201ENST00000347635 MUC2Q02817 5179 aa4.86□□□□□ -1.63
NUP50-201ENST00000347635 LCE3BQ5TA77 95 aa4.83□□□□□ -1.64
NUP50-201ENST00000347635 UBR4Q5T4S7 5183 aa4.78□□□□□ -1.64
NUP50-201ENST00000347635 KRTAP9-6A0A140TA67 174 aa4.75□□□□□ -1.65
NUP50-201ENST00000347635 KRTAP19-7Q3SYF9 63 aa4.73□□□□□ -1.65
NUP50-201ENST00000347635 KRTAP2-3P0C7H8 128 aa4.69□□□□□ -1.66
NUP50-201ENST00000347635 KRTAP2-4Q9BYR9 128 aa4.69□□□□□ -1.66
NUP50-201ENST00000347635 KRTAP2-1Q9BYU5 128 aa4.69□□□□□ -1.66
NUP50-201ENST00000347635 MT1MQ8N339 61 aa4.68□□□□□ -1.66
NUP50-201ENST00000347635 LOC100996750A0A140TA64 210 aa4.63□□□□□ -1.67
NUP50-201ENST00000347635 LCE3DQ9BYE3 92 aa4.6□□□□□ -1.67
NUP50-201ENST00000347635 KRTAP9-6A8MVA2 160 aa4.6□□□□□ -1.67
NUP50-201ENST00000347635 KRTAP4-3Q9BYR4 195 aa4.59□□□□□ -1.68
NUP50-201ENST00000347635 LCE3EQ5T5B0 92 aa4.55□□□□□ -1.68
NUP50-201ENST00000347635 KRTAP6-3Q3LI67 103 aa4.54□□□□□ -1.68
NUP50-201ENST00000347635 LCE1AQ5T7P2 110 aa4.51□□□□□ -1.69
NUP50-201ENST00000347635 KRTAP9-7A8MTY7 169 aa4.42□□□□□ -1.7
NUP50-201ENST00000347635 MT3P25713 68 aa4.4□□□□□ -1.71
NUP50-201ENST00000347635 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.39□□□□□ -1.71
NUP50-201ENST00000347635 FSIP2Q5CZC0 6907 aa4.39□□□□□ -1.71
NUP50-201ENST00000347635 MT1AP04731 61 aa4.33□□□□□ -1.72
NUP50-201ENST00000347635 PRM1P04553 51 aa4.32□□□□□ -1.72
NUP50-201ENST00000347635 KRTAP20-1Q3LI63 56 aa4.31□□□□□ -1.72
NUP50-201ENST00000347635 LCE5AQ5TCM9 118 aa4.3□□□□□ -1.72
NUP50-201ENST00000347635 MT4P47944 62 aa4.29□□□□□ -1.72
NUP50-201ENST00000347635 KRTAP4-9Q9BYQ8 210 aa4.28□□□□□ -1.73
NUP50-201ENST00000347635 KMT2DO14686 5537 aa4.2□□□□□ -1.74
NUP50-201ENST00000347635 USH2AO75445 5202 aa4.19□□□□□ -1.74
NUP50-201ENST00000347635 LCE4AQ5TA78 99 aa4.16□□□□□ -1.74
NUP50-201ENST00000347635 KRTAP6-1Q3LI64 71 aa4.14□□□□□ -1.75
NUP50-201ENST00000347635 KRTAP2-2Q9BYT5 123 aa4.14□□□□□ -1.75
NUP50-201ENST00000347635 SYNE2Q8WXH0 6885 aaKnown RBP4.11□□□□□ -1.75
NUP50-201ENST00000347635 KRTAP5-9P26371 169 aa4.08□□□□□ -1.76
NUP50-201ENST00000347635 KRTAP9-4Q9BYQ2 154 aa4.02□□□□□ -1.77
NUP50-201ENST00000347635 SYNE1Q8NF91 8797 aaKnown RBP3.99□□□□□ -1.77
NUP50-201ENST00000347635 KRTAP6-2Q3LI66 62 aa3.95□□□□□ -1.78
NUP50-201ENST00000347635 LCE1DQ5T752 114 aa3.93□□□□□ -1.78
NUP50-201ENST00000347635 SSPOA2VEC9 5147 aa3.92□□□□□ -1.78
NUP50-201ENST00000347635 FCGBPQ9Y6R7 5405 aaPredicted RBP3.88□□□□□ -1.79
NUP50-201ENST00000347635 LCE1BQ5T7P3 118 aa3.88□□□□□ -1.79
NUP50-201ENST00000347635 MACF1Q9UPN3 7388 aaKnown RBP3.82□□□□□ -1.8
NUP50-201ENST00000347635 NEBP20929 6669 aa3.75□□□□□ -1.81
NUP50-201ENST00000347635 DSTQ03001 7570 aaKnown RBP3.73□□□□□ -1.81
NUP50-201ENST00000347635 MUC12Q9UKN1 5478 aa3.71□□□□□ -1.82
NUP50-201ENST00000347635 OBSCNQ5VST9 7968 aa3.71□□□□□ -1.82
NUP50-201ENST00000347635 KRTAP5-5Q701N2 237 aaPredicted RBP3.54□□□□□ -1.84
NUP50-201ENST00000347635 KRTAP20-2Q3LI61 65 aa3.53□□□□□ -1.84
NUP50-201ENST00000347635 KRTAP4-6Q9BYQ5 205 aa3.47□□□□□ -1.85
NUP50-201ENST00000347635 KRTAP5-4Q6L8H1 288 aa3.43□□□□□ -1.86
NUP50-201ENST00000347635 MDN1Q9NU22 5596 aa3.43□□□□□ -1.86
NUP50-201ENST00000347635 KRTAP9-9Q9BYP9 154 aa3.39□□□□□ -1.87
NUP50-201ENST00000347635 LCE1CQ5T751 118 aa3.21□□□□□ -1.9
NUP50-201ENST00000347635 LCE1EQ5T753 118 aa3.21□□□□□ -1.9
NUP50-201ENST00000347635 LCE1FQ5T754 118 aa3.21□□□□□ -1.9
NUP50-201ENST00000347635 KRTAP4-11Q9BYQ6 195 aa3.19□□□□□ -1.9
NUP50-201ENST00000347635 GPR98Q8WXG9 6306 aa3.07□□□□□ -1.92
NUP50-201ENST00000347635 KRTAP5-3Q6L8H2 238 aa2.98□□□□□ -1.93
NUP50-201ENST00000347635 KRTAP5-2Q701N4 177 aa2.89□□□□□ -1.95
NUP50-201ENST00000347635 KRTAP4-4Q9BYR3 166 aa2.77□□□□□ -1.97
NUP50-201ENST00000347635 KRTAP4-12Q9BQ66 201 aa2.74□□□□□ -1.97
NUP50-201ENST00000347635 KRTAP4-2Q9BYR5 136 aa2.74□□□□□ -1.97
NUP50-201ENST00000347635 HMCN1Q96RW7 5635 aa2.73□□□□□ -1.97
NUP50-201ENST00000347635 AHNAK2Q8IVF2 5795 aa2.72□□□□□ -1.97
NUP50-201ENST00000347635 MUC19Q7Z5P9 8384 aa2.71□□□□□ -1.97
NUP50-201ENST00000347635 KRTAP5-10Q6L8G5 202 aa2.71□□□□□ -1.98
NUP50-201ENST00000347635 KRTAP5-8O75690 187 aa2.68□□□□□ -1.98
NUP50-201ENST00000347635 MUC5ACP98088 5654 aa2.66□□□□□ -1.98
NUP50-201ENST00000347635 KRTAP5-1Q6L8H4 278 aa2.48□□□□□ -2.01
NUP50-201ENST00000347635 KRTAP5-11Q6L8G4 156 aa2.44□□□□□ -2.02
NUP50-201ENST00000347635 KRTAP21-2Q3LI59 83 aa2.36□□□□□ -2.03
NUP50-201ENST00000347635 MUC5BQ9HC84 5762 aaPredicted RBP2.35□□□□□ -2.03
NUP50-201ENST00000347635 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.32□□□□□ -2.04
NUP50-201ENST00000347635 KRTAP5-7Q6L8G8 165 aa2.32□□□□□ -2.04
NUP50-201ENST00000347635 AHNAKQ09666 5890 aaKnown RBP2.31□□□□□ -2.04
NUP50-201ENST00000347635 KRTAP21-1Q3LI58 79 aa2.24□□□□□ -2.05
NUP50-201ENST00000347635 PHGR1C9JFL3 82 aa2.15□□□□□ -2.07
NUP50-201ENST00000347635 MUC16Q8WXI7 14507 aa1.34□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 101.3 ms