RNA–Protein interactions for RNA: ENST00000344204.8

TRIO-202, Transcript of trio Rho guanine nucleotide exchange factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIO, Length 11,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIO-202ENST00000344204 KRTAP9-2Q9BYQ4 174 aa3.8□□□□□ -1.8
TRIO-202ENST00000344204 KRTAP9-7A8MTY7 169 aa3.78□□□□□ -1.8
TRIO-202ENST00000344204 LPAP08519 4548 aa3.77□□□□□ -1.81
TRIO-202ENST00000344204 PCLOQ9Y6V0 5065 aa3.76□□□□□ -1.81
TRIO-202ENST00000344204 KRTAP2-2Q9BYT5 123 aa3.66□□□□□ -1.82
TRIO-202ENST00000344204 HYDINQ4G0P3 5121 aa3.65□□□□□ -1.83
TRIO-202ENST00000344204 LCE1DQ5T752 114 aa3.64□□□□□ -1.83
TRIO-202ENST00000344204 RYR2Q92736 4967 aa3.63□□□□□ -1.83
TRIO-202ENST00000344204 LCE1BQ5T7P3 118 aa3.61□□□□□ -1.83
TRIO-202ENST00000344204 KRTAP6-1Q3LI64 71 aa3.58□□□□□ -1.84
TRIO-202ENST00000344204 KRTAP9-6A0A140TA67 174 aa3.55□□□□□ -1.84
TRIO-202ENST00000344204 LCE2DQ5TA82 110 aaPredicted RBP3.55□□□□□ -1.84
TRIO-202ENST00000344204 HERC1Q15751 4861 aa3.53□□□□□ -1.84
TRIO-202ENST00000344204 KRTAP19-6Q3LI70 58 aa3.51□□□□□ -1.85
TRIO-202ENST00000344204 MT4P47944 62 aa3.5□□□□□ -1.85
TRIO-202ENST00000344204 HERC2O95714 4834 aa3.49□□□□□ -1.85
TRIO-202ENST00000344204 LCE1AQ5T7P2 110 aa3.44□□□□□ -1.86
TRIO-202ENST00000344204 KIAA1109Q2LD37 5005 aa3.41□□□□□ -1.86
TRIO-202ENST00000344204 KRTAP9-4Q9BYQ2 154 aa3.4□□□□□ -1.87
TRIO-202ENST00000344204 LCE5AQ5TCM9 118 aa3.38□□□□□ -1.87
TRIO-202ENST00000344204 SYNE1Q8NF91 8797 aaKnown RBP3.28□□□□□ -1.88
TRIO-202ENST00000344204 LCE1EQ5T753 118 aa3.27□□□□□ -1.89
TRIO-202ENST00000344204 KRTAP6-3Q3LI67 103 aa3.25□□□□□ -1.89
TRIO-202ENST00000344204 HMCN2Q8NDA2 5059 aa3.23□□□□□ -1.89
TRIO-202ENST00000344204 RNF213Q63HN8 5207 aa3.21□□□□□ -1.9
TRIO-202ENST00000344204 KRTAP5-5Q701N2 237 aaPredicted RBP3.17□□□□□ -1.9
TRIO-202ENST00000344204 KRTAP4-11Q9BYQ6 195 aa3.16□□□□□ -1.9
TRIO-202ENST00000344204 SYNE2Q8WXH0 6885 aaKnown RBP3.15□□□□□ -1.9
TRIO-202ENST00000344204 EPPK1P58107 5090 aaKnown RBP3.11□□□□□ -1.91
TRIO-202ENST00000344204 UBR4Q5T4S7 5183 aa3.08□□□□□ -1.92
TRIO-202ENST00000344204 FAT4Q6V0I7 4981 aa3.05□□□□□ -1.92
TRIO-202ENST00000344204 LCE2AQ5TA79 106 aaPredicted RBP3.04□□□□□ -1.92
TRIO-202ENST00000344204 ABCA13Q86UQ4 5058 aa3.03□□□□□ -1.92
TRIO-202ENST00000344204 LCE1CQ5T751 118 aa2.98□□□□□ -1.93
TRIO-202ENST00000344204 LCE1FQ5T754 118 aa2.98□□□□□ -1.93
TRIO-202ENST00000344204 LCE4AQ5TA78 99 aa2.94□□□□□ -1.94
TRIO-202ENST00000344204 KMT2DO14686 5537 aa2.91□□□□□ -1.94
TRIO-202ENST00000344204 MUC2Q02817 5179 aa2.89□□□□□ -1.95
TRIO-202ENST00000344204 USH2AO75445 5202 aa2.75□□□□□ -1.97
TRIO-202ENST00000344204 FCGBPQ9Y6R7 5405 aaPredicted RBP2.66□□□□□ -1.98
TRIO-202ENST00000344204 KRTAP20-1Q3LI63 56 aa2.65□□□□□ -1.98
TRIO-202ENST00000344204 KRTAP4-4Q9BYR3 166 aa2.62□□□□□ -1.99
TRIO-202ENST00000344204 MUC12Q9UKN1 5478 aa2.57□□□□□ -2
TRIO-202ENST00000344204 KRTAP4-6Q9BYQ5 205 aa2.54□□□□□ -2
TRIO-202ENST00000344204 FSIP2Q5CZC0 6907 aa2.53□□□□□ -2.01
TRIO-202ENST00000344204 KRTAP20-2Q3LI61 65 aa2.53□□□□□ -2.01
TRIO-202ENST00000344204 KRTAP9-9Q9BYP9 154 aa2.53□□□□□ -2.01
TRIO-202ENST00000344204 MDN1Q9NU22 5596 aa2.51□□□□□ -2.01
TRIO-202ENST00000344204 KRTAP5-9P26371 169 aa2.49□□□□□ -2.01
TRIO-202ENST00000344204 OBSCNQ5VST9 7968 aa2.49□□□□□ -2.01
TRIO-202ENST00000344204 SSPOA2VEC9 5147 aa2.48□□□□□ -2.01
TRIO-202ENST00000344204 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.47□□□□□ -2.01
TRIO-202ENST00000344204 KRTAP5-4Q6L8H1 288 aa2.4□□□□□ -2.03
TRIO-202ENST00000344204 KRTAP4-12Q9BQ66 201 aa2.32□□□□□ -2.04
TRIO-202ENST00000344204 KRTAP4-2Q9BYR5 136 aa2.32□□□□□ -2.04
TRIO-202ENST00000344204 KRTAP5-10Q6L8G5 202 aa2.29□□□□□ -2.04
TRIO-202ENST00000344204 DSTQ03001 7570 aaKnown RBP2.23□□□□□ -2.05
TRIO-202ENST00000344204 KRTAP5-2Q701N4 177 aa2.14□□□□□ -2.07
TRIO-202ENST00000344204 NEBP20929 6669 aa2.11□□□□□ -2.07
TRIO-202ENST00000344204 KRTAP21-1Q3LI58 79 aa2.04□□□□□ -2.08
TRIO-202ENST00000344204 KRTAP5-3Q6L8H2 238 aa2□□□□□ -2.09
TRIO-202ENST00000344204 HMCN1Q96RW7 5635 aa2□□□□□ -2.09
TRIO-202ENST00000344204 MUC19Q7Z5P9 8384 aa1.99□□□□□ -2.09
TRIO-202ENST00000344204 MUC5ACP98088 5654 aa1.98□□□□□ -2.09
TRIO-202ENST00000344204 MUC5BQ9HC84 5762 aaPredicted RBP1.97□□□□□ -2.09
TRIO-202ENST00000344204 GPR98Q8WXG9 6306 aa1.92□□□□□ -2.1
TRIO-202ENST00000344204 KRTAP5-1Q6L8H4 278 aa1.91□□□□□ -2.1
TRIO-202ENST00000344204 KRTAP21-2Q3LI59 83 aa1.84□□□□□ -2.11
TRIO-202ENST00000344204 KRTAP5-11Q6L8G4 156 aa1.77□□□□□ -2.13
TRIO-202ENST00000344204 MACF1Q9UPN3 7388 aaKnown RBP1.72□□□□□ -2.13
TRIO-202ENST00000344204 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.67□□□□□ -2.14
TRIO-202ENST00000344204 KRTAP5-8O75690 187 aa1.63□□□□□ -2.15
TRIO-202ENST00000344204 AHNAK2Q8IVF2 5795 aa1.58□□□□□ -2.16
TRIO-202ENST00000344204 PHGR1C9JFL3 82 aa1.53□□□□□ -2.16
TRIO-202ENST00000344204 AHNAKQ09666 5890 aaKnown RBP1.52□□□□□ -2.17
TRIO-202ENST00000344204 KRTAP5-7Q6L8G8 165 aa1.38□□□□□ -2.19
TRIO-202ENST00000344204 MUC16Q8WXI7 14507 aa1.17□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 5.5 ms