RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 CRCT1Q9UGL9 99 aa6.55□□□□□ -1.36
COL9A3-201ENST00000343916 MUC12Q9UKN1 5478 aa6.53□□□□□ -1.36
COL9A3-201ENST00000343916 MACF1Q9UPN3 7388 aaKnown RBP6.51□□□□□ -1.37
COL9A3-201ENST00000343916 KRTAP4-3Q9BYR4 195 aa6.48□□□□□ -1.37
COL9A3-201ENST00000343916 KRTAP2-3P0C7H8 128 aa6.43□□□□□ -1.38
COL9A3-201ENST00000343916 KRTAP2-4Q9BYR9 128 aa6.43□□□□□ -1.38
COL9A3-201ENST00000343916 KRTAP2-1Q9BYU5 128 aa6.43□□□□□ -1.38
COL9A3-201ENST00000343916 LOC100996750A0A140TA64 210 aa6.4□□□□□ -1.38
COL9A3-201ENST00000343916 KRTAP19-3Q7Z4W3 81 aa6.39□□□□□ -1.39
COL9A3-201ENST00000343916 MT1MQ8N339 61 aa6.36□□□□□ -1.39
COL9A3-201ENST00000343916 MT1GP13640 62 aa6.34□□□□□ -1.4
COL9A3-201ENST00000343916 SYNE2Q8WXH0 6885 aaKnown RBP6.33□□□□□ -1.4
COL9A3-201ENST00000343916 SPRR2FQ96RM1 72 aa6.29□□□□□ -1.4
COL9A3-201ENST00000343916 DSTQ03001 7570 aaKnown RBP6.24□□□□□ -1.41
COL9A3-201ENST00000343916 LCE5AQ5TCM9 118 aa6.2□□□□□ -1.42
COL9A3-201ENST00000343916 KRTAP9-6A0A140TA67 174 aa6.14□□□□□ -1.43
COL9A3-201ENST00000343916 KRTAP5-9P26371 169 aa6.14□□□□□ -1.43
COL9A3-201ENST00000343916 MDN1Q9NU22 5596 aa6.09□□□□□ -1.44
COL9A3-201ENST00000343916 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.06□□□□□ -1.44
COL9A3-201ENST00000343916 LCE1AQ5T7P2 110 aa6□□□□□ -1.45
COL9A3-201ENST00000343916 KRTAP6-3Q3LI67 103 aa5.92□□□□□ -1.46
COL9A3-201ENST00000343916 SPRR2EP22531 72 aa5.9□□□□□ -1.47
COL9A3-201ENST00000343916 SPRR2BP35325 72 aa5.9□□□□□ -1.47
COL9A3-201ENST00000343916 SPRR2AP35326 72 aa5.9□□□□□ -1.47
COL9A3-201ENST00000343916 LCE3BQ5TA77 95 aa5.82□□□□□ -1.48
COL9A3-201ENST00000343916 KRTAP12-4P60329 112 aa5.8□□□□□ -1.48
COL9A3-201ENST00000343916 KRTAP6-1Q3LI64 71 aa5.76□□□□□ -1.49
COL9A3-201ENST00000343916 SYNE1Q8NF91 8797 aaKnown RBP5.72□□□□□ -1.49
COL9A3-201ENST00000343916 KRTAP4-9Q9BYQ8 210 aa5.69□□□□□ -1.5
COL9A3-201ENST00000343916 SPRR2DP22532 72 aa5.67□□□□□ -1.5
COL9A3-201ENST00000343916 KRTAP9-7A8MTY7 169 aa5.66□□□□□ -1.5
COL9A3-201ENST00000343916 MT1AP04731 61 aa5.66□□□□□ -1.5
COL9A3-201ENST00000343916 KRTAP5-5Q701N2 237 aaPredicted RBP5.64□□□□□ -1.51
COL9A3-201ENST00000343916 NEBP20929 6669 aa5.56□□□□□ -1.52
COL9A3-201ENST00000343916 LCE3DQ9BYE3 92 aa5.38□□□□□ -1.55
COL9A3-201ENST00000343916 KRTAP9-4Q9BYQ2 154 aa5.35□□□□□ -1.55
COL9A3-201ENST00000343916 LCE3EQ5T5B0 92 aa5.29□□□□□ -1.56
COL9A3-201ENST00000343916 OBSCNQ5VST9 7968 aa5.21□□□□□ -1.58
COL9A3-201ENST00000343916 KRTAP6-2Q3LI66 62 aa5.2□□□□□ -1.58
COL9A3-201ENST00000343916 PRM1P04553 51 aa5.17□□□□□ -1.58
COL9A3-201ENST00000343916 KRTAP5-4Q6L8H1 288 aa5.16□□□□□ -1.58
COL9A3-201ENST00000343916 MT3P25713 68 aa5.09□□□□□ -1.59
COL9A3-201ENST00000343916 KRTAP2-2Q9BYT5 123 aa5.04□□□□□ -1.6
COL9A3-201ENST00000343916 KRTAP20-1Q3LI63 56 aa4.99□□□□□ -1.61
COL9A3-201ENST00000343916 KRTAP4-6Q9BYQ5 205 aa4.99□□□□□ -1.61
COL9A3-201ENST00000343916 MT4P47944 62 aa4.98□□□□□ -1.61
COL9A3-201ENST00000343916 LCE4AQ5TA78 99 aa4.96□□□□□ -1.62
COL9A3-201ENST00000343916 LCE1DQ5T752 114 aa4.85□□□□□ -1.63
COL9A3-201ENST00000343916 KRTAP20-2Q3LI61 65 aa4.84□□□□□ -1.64
COL9A3-201ENST00000343916 HMCN1Q96RW7 5635 aa4.83□□□□□ -1.64
COL9A3-201ENST00000343916 KRTAP5-2Q701N4 177 aa4.71□□□□□ -1.66
COL9A3-201ENST00000343916 KRTAP5-3Q6L8H2 238 aa4.66□□□□□ -1.66
COL9A3-201ENST00000343916 MUC5ACP98088 5654 aa4.27□□□□□ -1.73
COL9A3-201ENST00000343916 LCE1BQ5T7P3 118 aa4.19□□□□□ -1.74
COL9A3-201ENST00000343916 LCE1EQ5T753 118 aa4.19□□□□□ -1.74
COL9A3-201ENST00000343916 KRTAP4-11Q9BYQ6 195 aa4.16□□□□□ -1.74
COL9A3-201ENST00000343916 AHNAK2Q8IVF2 5795 aa4.13□□□□□ -1.75
COL9A3-201ENST00000343916 KRTAP5-1Q6L8H4 278 aa4.09□□□□□ -1.76
COL9A3-201ENST00000343916 KRTAP4-2Q9BYR5 136 aa4.02□□□□□ -1.77
COL9A3-201ENST00000343916 KRTAP5-8O75690 187 aa4.01□□□□□ -1.77
COL9A3-201ENST00000343916 KRTAP5-10Q6L8G5 202 aa4□□□□□ -1.77
COL9A3-201ENST00000343916 LCE1CQ5T751 118 aa3.97□□□□□ -1.77
COL9A3-201ENST00000343916 KRTAP5-7Q6L8G8 165 aa3.86□□□□□ -1.79
COL9A3-201ENST00000343916 KRTAP21-2Q3LI59 83 aa3.71□□□□□ -1.81
COL9A3-201ENST00000343916 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.71□□□□□ -1.81
COL9A3-201ENST00000343916 GPR98Q8WXG9 6306 aa3.63□□□□□ -1.83
COL9A3-201ENST00000343916 LCE1FQ5T754 118 aa3.57□□□□□ -1.84
COL9A3-201ENST00000343916 KRTAP9-9Q9BYP9 154 aa3.51□□□□□ -1.85
COL9A3-201ENST00000343916 MUC5BQ9HC84 5762 aaPredicted RBP3.51□□□□□ -1.85
COL9A3-201ENST00000343916 KRTAP4-4Q9BYR3 166 aa3.45□□□□□ -1.86
COL9A3-201ENST00000343916 KRTAP5-11Q6L8G4 156 aa3.44□□□□□ -1.86
COL9A3-201ENST00000343916 KRTAP4-12Q9BQ66 201 aa3.34□□□□□ -1.88
COL9A3-201ENST00000343916 MUC19Q7Z5P9 8384 aa3.24□□□□□ -1.89
COL9A3-201ENST00000343916 KRTAP21-1Q3LI58 79 aa3.21□□□□□ -1.89
COL9A3-201ENST00000343916 AHNAKQ09666 5890 aaKnown RBP2.98□□□□□ -1.93
COL9A3-201ENST00000343916 PHGR1C9JFL3 82 aa2.97□□□□□ -1.93
COL9A3-201ENST00000343916 MUC16Q8WXI7 14507 aa1.91□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 11.4 ms