RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 K7ERS5 55 aa7.69□□□□□ -1.18
SYNE2-201ENST00000341472 KRTAP19-7Q3SYF9 63 aa7.56□□□□□ -1.2
SYNE2-201ENST00000341472 KRTAP4-9Q9BYQ8 210 aa7.52□□□□□ -1.21
SYNE2-201ENST00000341472 MT1EP04732 61 aa7.5□□□□□ -1.21
SYNE2-201ENST00000341472 BRK1Q8WUW1 75 aa7.5□□□□□ -1.21
SYNE2-201ENST00000341472 LCE5AQ5TCM9 118 aa7.48□□□□□ -1.21
SYNE2-201ENST00000341472 KRTAP19-3Q7Z4W3 81 aa7.46□□□□□ -1.22
SYNE2-201ENST00000341472 DSTQ03001 7570 aaKnown RBP7.42□□□□□ -1.22
SYNE2-201ENST00000341472 KRTAP4-2Q9BYR5 136 aa7.41□□□□□ -1.22
SYNE2-201ENST00000341472 KRTAP19-5Q3LI72 72 aa7.38□□□□□ -1.23
SYNE2-201ENST00000341472 C10orf95Q9H7T3 257 aa7.38□□□□□ -1.23
SYNE2-201ENST00000341472 MT1GP13640 62 aa7.31□□□□□ -1.24
SYNE2-201ENST00000341472 TNP1P09430 55 aa7.3□□□□□ -1.24
SYNE2-201ENST00000341472 LCE4AQ5TA78 99 aa7.3□□□□□ -1.24
SYNE2-201ENST00000341472 ROMO1P60602 79 aa7.25□□□□□ -1.25
SYNE2-201ENST00000341472 PP632Q6XCG6 107 aa7.24□□□□□ -1.25
SYNE2-201ENST00000341472 GPR98Q8WXG9 6306 aa7.23□□□□□ -1.25
SYNE2-201ENST00000341472 KRTAP4-11Q9BYQ6 195 aa7.22□□□□□ -1.25
SYNE2-201ENST00000341472 KRTAP25-1Q3LHN0 102 aa7.21□□□□□ -1.26
SYNE2-201ENST00000341472 LCE3AQ5TA76 89 aa7.17□□□□□ -1.26
SYNE2-201ENST00000341472 PRO0628Q9UI54 55 aa7.17□□□□□ -1.26
SYNE2-201ENST00000341472 MT1LQ93083 61 aa7.16□□□□□ -1.26
SYNE2-201ENST00000341472 MT1MQ8N339 61 aa7.15□□□□□ -1.26
SYNE2-201ENST00000341472 PMAIP1Q13794 54 aa7.12□□□□□ -1.27
SYNE2-201ENST00000341472 KRTAP23-1A1A580 65 aa7□□□□□ -1.29
SYNE2-201ENST00000341472 KRTAP4-3Q9BYR4 195 aa6.98□□□□□ -1.29
SYNE2-201ENST00000341472 HMCN1Q96RW7 5635 aa6.94□□□□□ -1.3
SYNE2-201ENST00000341472 KRTAP12-3P60328 96 aa6.93□□□□□ -1.3
SYNE2-201ENST00000341472 MT4P47944 62 aa6.92□□□□□ -1.3
SYNE2-201ENST00000341472 KRTAP19-4Q3LI73 84 aa6.9□□□□□ -1.3
SYNE2-201ENST00000341472 KRTAP5-4Q6L8H1 288 aa6.84□□□□□ -1.31
SYNE2-201ENST00000341472 KRTAP5-3Q6L8H2 238 aa6.73□□□□□ -1.33
SYNE2-201ENST00000341472 AHNAK2Q8IVF2 5795 aa6.73□□□□□ -1.33
SYNE2-201ENST00000341472 KTN1-AS1Q86SY8 53 aa6.69□□□□□ -1.34
SYNE2-201ENST00000341472 PRAC1Q96KF2 57 aa6.61□□□□□ -1.35
SYNE2-201ENST00000341472 KRTAP15-1Q3LI76 137 aa6.53□□□□□ -1.36
SYNE2-201ENST00000341472 KRTAP5-5Q701N2 237 aaPredicted RBP6.53□□□□□ -1.36
SYNE2-201ENST00000341472 KRTAP5-10Q6L8G5 202 aa6.51□□□□□ -1.37
SYNE2-201ENST00000341472 KRTAP20-2Q3LI61 65 aa6.46□□□□□ -1.38
SYNE2-201ENST00000341472 KRTAP12-4P60329 112 aa6.45□□□□□ -1.38
SYNE2-201ENST00000341472 SYNE1Q8NF91 8797 aaKnown RBP6.44□□□□□ -1.38
SYNE2-201ENST00000341472 SPRR5A0A1B0GTR4 108 aa6.44□□□□□ -1.38
SYNE2-201ENST00000341472 H3BS24 57 aa6.39□□□□□ -1.39
SYNE2-201ENST00000341472 LCE3CQ5T5A8 94 aa6.37□□□□□ -1.39
SYNE2-201ENST00000341472 SVIPQ8NHG7 77 aa6.31□□□□□ -1.4
SYNE2-201ENST00000341472 KRTAP5-7Q6L8G8 165 aa6.28□□□□□ -1.4
SYNE2-201ENST00000341472 MT1AP04731 61 aa6.1□□□□□ -1.43
SYNE2-201ENST00000341472 KRTAP6-1Q3LI64 71 aa6.06□□□□□ -1.44
SYNE2-201ENST00000341472 KRTAP9-6A8MVA2 160 aa5.98□□□□□ -1.45
SYNE2-201ENST00000341472 KRTAP5-2Q701N4 177 aa5.97□□□□□ -1.45
SYNE2-201ENST00000341472 KRTAP6-2Q3LI66 62 aa5.81□□□□□ -1.48
SYNE2-201ENST00000341472 KRTAP5-8O75690 187 aa5.71□□□□□ -1.5
SYNE2-201ENST00000341472 OBSCNQ5VST9 7968 aa5.68□□□□□ -1.5
SYNE2-201ENST00000341472 AHNAKQ09666 5890 aaKnown RBP5.64□□□□□ -1.51
SYNE2-201ENST00000341472 MT3P25713 68 aa5.61□□□□□ -1.51
SYNE2-201ENST00000341472 LUZP6Q538Z0 58 aa5.59□□□□□ -1.51
SYNE2-201ENST00000341472 MUC5BQ9HC84 5762 aaPredicted RBP5.56□□□□□ -1.52
SYNE2-201ENST00000341472 MUC5ACP98088 5654 aa5.52□□□□□ -1.53
SYNE2-201ENST00000341472 KRTAP5-1Q6L8H4 278 aa5.37□□□□□ -1.55
SYNE2-201ENST00000341472 LCE1EQ5T753 118 aa5.16□□□□□ -1.58
SYNE2-201ENST00000341472 NDUFAF8A1L188 74 aa5.09□□□□□ -1.59
SYNE2-201ENST00000341472 KRTAP5-6Q6L8G9 129 aaPredicted RBP5□□□□□ -1.61
SYNE2-201ENST00000341472 LCE1BQ5T7P3 118 aa4.88□□□□□ -1.63
SYNE2-201ENST00000341472 KRTAP5-11Q6L8G4 156 aa4.88□□□□□ -1.63
SYNE2-201ENST00000341472 A0A0A0MQY5 61 aa4.84□□□□□ -1.63
SYNE2-201ENST00000341472 LCE1CQ5T751 118 aa4.77□□□□□ -1.65
SYNE2-201ENST00000341472 LCE3DQ9BYE3 92 aa4.67□□□□□ -1.66
SYNE2-201ENST00000341472 LCE3EQ5T5B0 92 aa4.51□□□□□ -1.69
SYNE2-201ENST00000341472 INE1O15225 51 aa4.28□□□□□ -1.72
SYNE2-201ENST00000341472 LCE1FQ5T754 118 aa4.23□□□□□ -1.73
SYNE2-201ENST00000341472 KRTAP4-4Q9BYR3 166 aa4.19□□□□□ -1.74
SYNE2-201ENST00000341472 KRTAP21-2Q3LI59 83 aa3.99□□□□□ -1.77
SYNE2-201ENST00000341472 PHGR1C9JFL3 82 aa3.81□□□□□ -1.8
SYNE2-201ENST00000341472 PRM1P04553 51 aa3.71□□□□□ -1.82
SYNE2-201ENST00000341472 MUC19Q7Z5P9 8384 aa3.54□□□□□ -1.84
SYNE2-201ENST00000341472 KRTAP21-1Q3LI58 79 aa2.91□□□□□ -1.94
SYNE2-201ENST00000341472 MUC16Q8WXI7 14507 aa2.52□□□□□ -2.01
Retrieved 77 of 20,778 RNA–protein pairs in 12.1 ms