RNA–Protein interactions for RNA: ENST00000340417.7

LIN54-201, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIN54, Length 6,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-201ENST00000340417 FSIP2Q5CZC0 6907 aa4.39□□□□□ -1.71
LIN54-201ENST00000340417 KRTAP20-1Q3LI63 56 aa4.37□□□□□ -1.71
LIN54-201ENST00000340417 MT1EP04732 61 aa4.33□□□□□ -1.72
LIN54-201ENST00000340417 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.32□□□□□ -1.72
LIN54-201ENST00000340417 MT4P47944 62 aa4.31□□□□□ -1.72
LIN54-201ENST00000340417 KRTAP6-3Q3LI67 103 aa4.29□□□□□ -1.72
LIN54-201ENST00000340417 MT1LQ93083 61 aa4.29□□□□□ -1.72
LIN54-201ENST00000340417 MT1MQ8N339 61 aa4.21□□□□□ -1.74
LIN54-201ENST00000340417 KRTAP4-7Q9BYR0 210 aa4.19□□□□□ -1.74
LIN54-201ENST00000340417 KRTAP2-3P0C7H8 128 aa4.16□□□□□ -1.74
LIN54-201ENST00000340417 KRTAP2-4Q9BYR9 128 aa4.16□□□□□ -1.74
LIN54-201ENST00000340417 SYNE2Q8WXH0 6885 aaKnown RBP4.13□□□□□ -1.75
LIN54-201ENST00000340417 MUC2Q02817 5179 aa4.06□□□□□ -1.76
LIN54-201ENST00000340417 LCE1AQ5T7P2 110 aa4.05□□□□□ -1.76
LIN54-201ENST00000340417 KRTAP4-3Q9BYR4 195 aa4.05□□□□□ -1.76
LIN54-201ENST00000340417 SPRR5A0A1B0GTR4 108 aa4.05□□□□□ -1.76
LIN54-201ENST00000340417 KRTAP2-2Q9BYT5 123 aa4.01□□□□□ -1.77
LIN54-201ENST00000340417 KRTAP2-1Q9BYU5 128 aa4.01□□□□□ -1.77
LIN54-201ENST00000340417 KRTAP19-7Q3SYF9 63 aa4□□□□□ -1.77
LIN54-201ENST00000340417 MT3P25713 68 aa3.99□□□□□ -1.77
LIN54-201ENST00000340417 LCE3DQ9BYE3 92 aa3.98□□□□□ -1.77
LIN54-201ENST00000340417 LOC100996750A0A140TA64 210 aa3.98□□□□□ -1.77
LIN54-201ENST00000340417 KRTAP4-9Q9BYQ8 210 aa3.89□□□□□ -1.79
LIN54-201ENST00000340417 LCE4AQ5TA78 99 aa3.87□□□□□ -1.79
LIN54-201ENST00000340417 LCE3EQ5T5B0 92 aa3.87□□□□□ -1.79
LIN54-201ENST00000340417 LCE1DQ5T752 114 aa3.84□□□□□ -1.79
LIN54-201ENST00000340417 MT1AP04731 61 aa3.83□□□□□ -1.8
LIN54-201ENST00000340417 LCE1BQ5T7P3 118 aa3.81□□□□□ -1.8
LIN54-201ENST00000340417 LCE5AQ5TCM9 118 aa3.8□□□□□ -1.8
LIN54-201ENST00000340417 USH2AO75445 5202 aa3.73□□□□□ -1.81
LIN54-201ENST00000340417 MACF1Q9UPN3 7388 aaKnown RBP3.66□□□□□ -1.82
LIN54-201ENST00000340417 KRTAP5-9P26371 169 aa3.64□□□□□ -1.83
LIN54-201ENST00000340417 SYNE1Q8NF91 8797 aaKnown RBP3.62□□□□□ -1.83
LIN54-201ENST00000340417 NEBP20929 6669 aa3.62□□□□□ -1.83
LIN54-201ENST00000340417 SSPOA2VEC9 5147 aa3.61□□□□□ -1.83
LIN54-201ENST00000340417 KRTAP6-1Q3LI64 71 aa3.6□□□□□ -1.83
LIN54-201ENST00000340417 KRTAP6-2Q3LI66 62 aa3.6□□□□□ -1.83
LIN54-201ENST00000340417 KRTAP9-4Q9BYQ2 154 aa3.58□□□□□ -1.84
LIN54-201ENST00000340417 FCGBPQ9Y6R7 5405 aaPredicted RBP3.54□□□□□ -1.84
LIN54-201ENST00000340417 KMT2DO14686 5537 aa3.4□□□□□ -1.86
LIN54-201ENST00000340417 OBSCNQ5VST9 7968 aa3.4□□□□□ -1.86
LIN54-201ENST00000340417 KRTAP9-6A8MVA2 160 aa3.38□□□□□ -1.87
LIN54-201ENST00000340417 PRM1P04553 51 aa3.38□□□□□ -1.87
LIN54-201ENST00000340417 KRTAP9-9Q9BYP9 154 aa3.37□□□□□ -1.87
LIN54-201ENST00000340417 DSTQ03001 7570 aaKnown RBP3.34□□□□□ -1.88
LIN54-201ENST00000340417 KRTAP4-6Q9BYQ5 205 aa3.32□□□□□ -1.88
LIN54-201ENST00000340417 LCE1CQ5T751 118 aa3.28□□□□□ -1.88
LIN54-201ENST00000340417 LCE1EQ5T753 118 aa3.28□□□□□ -1.88
LIN54-201ENST00000340417 LCE1FQ5T754 118 aa3.28□□□□□ -1.88
LIN54-201ENST00000340417 KRTAP20-2Q3LI61 65 aa3.26□□□□□ -1.89
LIN54-201ENST00000340417 MUC12Q9UKN1 5478 aa3.19□□□□□ -1.9
LIN54-201ENST00000340417 MDN1Q9NU22 5596 aa3.14□□□□□ -1.91
LIN54-201ENST00000340417 KRTAP5-4Q6L8H1 288 aa3.12□□□□□ -1.91
LIN54-201ENST00000340417 GPR98Q8WXG9 6306 aa3.02□□□□□ -1.93
LIN54-201ENST00000340417 KRTAP4-11Q9BYQ6 195 aa2.98□□□□□ -1.93
LIN54-201ENST00000340417 KRTAP5-3Q6L8H2 238 aa2.88□□□□□ -1.95
LIN54-201ENST00000340417 KRTAP5-5Q701N2 237 aaPredicted RBP2.83□□□□□ -1.96
LIN54-201ENST00000340417 KRTAP4-12Q9BQ66 201 aa2.8□□□□□ -1.96
LIN54-201ENST00000340417 KRTAP4-2Q9BYR5 136 aa2.8□□□□□ -1.96
LIN54-201ENST00000340417 KRTAP4-4Q9BYR3 166 aa2.64□□□□□ -1.99
LIN54-201ENST00000340417 KRTAP5-8O75690 187 aa2.59□□□□□ -2
LIN54-201ENST00000340417 AHNAK2Q8IVF2 5795 aa2.55□□□□□ -2
LIN54-201ENST00000340417 HMCN1Q96RW7 5635 aa2.54□□□□□ -2
LIN54-201ENST00000340417 MUC5ACP98088 5654 aa2.51□□□□□ -2.01
LIN54-201ENST00000340417 MUC19Q7Z5P9 8384 aa2.49□□□□□ -2.01
LIN54-201ENST00000340417 KRTAP5-2Q701N4 177 aa2.43□□□□□ -2.02
LIN54-201ENST00000340417 KRTAP5-10Q6L8G5 202 aa2.29□□□□□ -2.04
LIN54-201ENST00000340417 PHGR1C9JFL3 82 aa2.27□□□□□ -2.05
LIN54-201ENST00000340417 KRTAP5-7Q6L8G8 165 aa2.23□□□□□ -2.05
LIN54-201ENST00000340417 KRTAP5-1Q6L8H4 278 aa2.17□□□□□ -2.06
LIN54-201ENST00000340417 AHNAKQ09666 5890 aaKnown RBP2.16□□□□□ -2.06
LIN54-201ENST00000340417 MUC5BQ9HC84 5762 aaPredicted RBP2.13□□□□□ -2.07
LIN54-201ENST00000340417 KRTAP5-11Q6L8G4 156 aa2.09□□□□□ -2.07
LIN54-201ENST00000340417 KRTAP21-2Q3LI59 83 aa1.89□□□□□ -2.11
LIN54-201ENST00000340417 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.83□□□□□ -2.12
LIN54-201ENST00000340417 KRTAP21-1Q3LI58 79 aa1.6□□□□□ -2.15
LIN54-201ENST00000340417 MUC16Q8WXI7 14507 aa1.29□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 14.1 ms