RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 KRTAP2-1Q9BYU5 128 aa1.17□□□□□ -2.22
CSMD3-202ENST00000339701 MT1BP07438 61 aa1.16□□□□□ -2.22
CSMD3-202ENST00000339701 FSIP2Q5CZC0 6907 aa1.16□□□□□ -2.22
CSMD3-202ENST00000339701 LCE3EQ5T5B0 92 aa1.16□□□□□ -2.22
CSMD3-202ENST00000339701 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.16□□□□□ -2.22
CSMD3-202ENST00000339701 HMCN2Q8NDA2 5059 aa1.16□□□□□ -2.22
CSMD3-202ENST00000339701 GPR98Q8WXG9 6306 aa1.15□□□□□ -2.22
CSMD3-202ENST00000339701 KRTAP19-6Q3LI70 58 aa1.15□□□□□ -2.23
CSMD3-202ENST00000339701 LCE3DQ9BYE3 92 aa1.15□□□□□ -2.23
CSMD3-202ENST00000339701 SYNE1Q8NF91 8797 aaKnown RBP1.15□□□□□ -2.23
CSMD3-202ENST00000339701 KRTAP19-5Q3LI72 72 aa1.14□□□□□ -2.23
CSMD3-202ENST00000339701 MUC17Q685J3 4493 aa1.14□□□□□ -2.23
CSMD3-202ENST00000339701 LCE4AQ5TA78 99 aa1.13□□□□□ -2.23
CSMD3-202ENST00000339701 AHNAKQ09666 5890 aaKnown RBP1.13□□□□□ -2.23
CSMD3-202ENST00000339701 MT1AP04731 61 aa1.12□□□□□ -2.23
CSMD3-202ENST00000339701 FAT4Q6V0I7 4981 aa1.11□□□□□ -2.23
CSMD3-202ENST00000339701 NEBP20929 6669 aa1.11□□□□□ -2.23
CSMD3-202ENST00000339701 LCE5AQ5TCM9 118 aa1.11□□□□□ -2.23
CSMD3-202ENST00000339701 MT1XP80297 61 aa1.11□□□□□ -2.23
CSMD3-202ENST00000339701 KRTAP9-9Q9BYP9 154 aa1.1□□□□□ -2.23
CSMD3-202ENST00000339701 SYNE2Q8WXH0 6885 aaKnown RBP1.1□□□□□ -2.23
CSMD3-202ENST00000339701 KRTAP19-3Q7Z4W3 81 aa1.09□□□□□ -2.23
CSMD3-202ENST00000339701 MT1MQ8N339 61 aa1.09□□□□□ -2.23
CSMD3-202ENST00000339701 OBSCNQ5VST9 7968 aa1.08□□□□□ -2.24
CSMD3-202ENST00000339701 LPAP08519 4548 aa1.06□□□□□ -2.24
CSMD3-202ENST00000339701 RNF213Q63HN8 5207 aa1.06□□□□□ -2.24
CSMD3-202ENST00000339701 LCE1DQ5T752 114 aa1.06□□□□□ -2.24
CSMD3-202ENST00000339701 LCE1BQ5T7P3 118 aa1.05□□□□□ -2.24
CSMD3-202ENST00000339701 KRTAP9-4Q9BYQ2 154 aa1.05□□□□□ -2.24
CSMD3-202ENST00000339701 DSTQ03001 7570 aaKnown RBP1.05□□□□□ -2.24
CSMD3-202ENST00000339701 MACF1Q9UPN3 7388 aaKnown RBP1.04□□□□□ -2.24
CSMD3-202ENST00000339701 KRTAP4-8A0A0G2JLE6 195 aa1.04□□□□□ -2.24
CSMD3-202ENST00000339701 KRTAP4-8Q9BYQ9 185 aa1.04□□□□□ -2.24
CSMD3-202ENST00000339701 LCE1CQ5T751 118 aa1.02□□□□□ -2.25
CSMD3-202ENST00000339701 LCE1EQ5T753 118 aa1.02□□□□□ -2.25
CSMD3-202ENST00000339701 LCE1FQ5T754 118 aa1.02□□□□□ -2.25
CSMD3-202ENST00000339701 AHNAK2Q8IVF2 5795 aa1.02□□□□□ -2.25
CSMD3-202ENST00000339701 KMT2DO14686 5537 aa1.02□□□□□ -2.25
CSMD3-202ENST00000339701 KRTAP5-9P26371 169 aa1.01□□□□□ -2.25
CSMD3-202ENST00000339701 KRTAP4-9Q9BYQ8 210 aa1.01□□□□□ -2.25
CSMD3-202ENST00000339701 HMCN1Q96RW7 5635 aa1□□□□□ -2.25
CSMD3-202ENST00000339701 KRTAP4-7Q9BYR0 210 aa0.99□□□□□ -2.25
CSMD3-202ENST00000339701 KRTAP19-7Q3SYF9 63 aa0.97□□□□□ -2.25
CSMD3-202ENST00000339701 MUC2Q02817 5179 aa0.96□□□□□ -2.26
CSMD3-202ENST00000339701 LOC100996750A0A140TA64 210 aa0.95□□□□□ -2.26
CSMD3-202ENST00000339701 USH2AO75445 5202 aa0.93□□□□□ -2.26
CSMD3-202ENST00000339701 PRM1P04553 51 aa0.92□□□□□ -2.26
CSMD3-202ENST00000339701 MDN1Q9NU22 5596 aa0.91□□□□□ -2.26
CSMD3-202ENST00000339701 KRTAP4-12Q9BQ66 201 aa0.91□□□□□ -2.26
CSMD3-202ENST00000339701 SSPOA2VEC9 5147 aa0.9□□□□□ -2.27
CSMD3-202ENST00000339701 KRTAP5-2Q701N4 177 aa0.9□□□□□ -2.27
CSMD3-202ENST00000339701 KRTAP4-3Q9BYR4 195 aa0.9□□□□□ -2.27
CSMD3-202ENST00000339701 KRTAP9-6A8MVA2 160 aa0.86□□□□□ -2.27
CSMD3-202ENST00000339701 KRTAP6-2Q3LI66 62 aa0.85□□□□□ -2.27
CSMD3-202ENST00000339701 KRTAP5-4Q6L8H1 288 aa0.85□□□□□ -2.27
CSMD3-202ENST00000339701 FCGBPQ9Y6R7 5405 aaPredicted RBP0.83□□□□□ -2.28
CSMD3-202ENST00000339701 MUC12Q9UKN1 5478 aa0.83□□□□□ -2.28
CSMD3-202ENST00000339701 KRTAP4-2Q9BYR5 136 aa0.83□□□□□ -2.28
CSMD3-202ENST00000339701 KRTAP4-6Q9BYQ5 205 aa0.83□□□□□ -2.28
CSMD3-202ENST00000339701 MUC5BQ9HC84 5762 aaPredicted RBP0.83□□□□□ -2.28
CSMD3-202ENST00000339701 MUC19Q7Z5P9 8384 aa0.82□□□□□ -2.28
CSMD3-202ENST00000339701 KRTAP6-1Q3LI64 71 aa0.81□□□□□ -2.28
CSMD3-202ENST00000339701 MUC5ACP98088 5654 aa0.81□□□□□ -2.28
CSMD3-202ENST00000339701 KRTAP5-3Q6L8H2 238 aa0.78□□□□□ -2.28
CSMD3-202ENST00000339701 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.78□□□□□ -2.28
CSMD3-202ENST00000339701 KRTAP4-11Q9BYQ6 195 aa0.78□□□□□ -2.28
CSMD3-202ENST00000339701 KRTAP5-5Q701N2 237 aaPredicted RBP0.78□□□□□ -2.28
CSMD3-202ENST00000339701 KRTAP20-2Q3LI61 65 aa0.78□□□□□ -2.29
CSMD3-202ENST00000339701 KRTAP5-8O75690 187 aa0.77□□□□□ -2.29
CSMD3-202ENST00000339701 PHGR1C9JFL3 82 aa0.73□□□□□ -2.29
CSMD3-202ENST00000339701 KRTAP5-7Q6L8G8 165 aa0.73□□□□□ -2.29
CSMD3-202ENST00000339701 KRTAP5-1Q6L8H4 278 aa0.71□□□□□ -2.3
CSMD3-202ENST00000339701 KRTAP5-11Q6L8G4 156 aa0.68□□□□□ -2.3
CSMD3-202ENST00000339701 KRTAP5-10Q6L8G5 202 aa0.64□□□□□ -2.31
CSMD3-202ENST00000339701 KRTAP4-4Q9BYR3 166 aa0.61□□□□□ -2.31
CSMD3-202ENST00000339701 KRTAP21-1Q3LI58 79 aa0.58□□□□□ -2.32
CSMD3-202ENST00000339701 KRTAP21-2Q3LI59 83 aa0.49□□□□□ -2.33
CSMD3-202ENST00000339701 MUC16Q8WXI7 14507 aa0.45□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 16.2 ms