RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 LCE5AQ5TCM9 118 aa1.87□□□□□ -2.11
CSMD1-201ENST00000335551 RNF213Q63HN8 5207 aa1.87□□□□□ -2.11
CSMD1-201ENST00000335551 ABCA13Q86UQ4 5058 aa1.87□□□□□ -2.11
CSMD1-201ENST00000335551 LCE1DQ5T752 114 aa1.86□□□□□ -2.11
CSMD1-201ENST00000335551 KRTAP4-8A0A0G2JLE6 195 aa1.85□□□□□ -2.11
CSMD1-201ENST00000335551 KRTAP2-3P0C7H8 128 aa1.85□□□□□ -2.11
CSMD1-201ENST00000335551 KRTAP4-8Q9BYQ9 185 aa1.85□□□□□ -2.11
CSMD1-201ENST00000335551 KRTAP2-4Q9BYR9 128 aa1.85□□□□□ -2.11
CSMD1-201ENST00000335551 KRTAP9-7A8MTY7 169 aa1.84□□□□□ -2.11
CSMD1-201ENST00000335551 MT1MQ8N339 61 aa1.83□□□□□ -2.12
CSMD1-201ENST00000335551 LCE1CQ5T751 118 aa1.81□□□□□ -2.12
CSMD1-201ENST00000335551 LCE1EQ5T753 118 aa1.81□□□□□ -2.12
CSMD1-201ENST00000335551 LCE1FQ5T754 118 aa1.81□□□□□ -2.12
CSMD1-201ENST00000335551 LCE1AQ5T7P2 110 aa1.81□□□□□ -2.12
CSMD1-201ENST00000335551 KRTAP2-1Q9BYU5 128 aa1.8□□□□□ -2.12
CSMD1-201ENST00000335551 LPAP08519 4548 aa1.8□□□□□ -2.12
CSMD1-201ENST00000335551 KRTAP4-7Q9BYR0 210 aa1.79□□□□□ -2.12
CSMD1-201ENST00000335551 KRTAP19-6Q3LI70 58 aa1.79□□□□□ -2.12
CSMD1-201ENST00000335551 SYNE2Q8WXH0 6885 aaKnown RBP1.79□□□□□ -2.12
CSMD1-201ENST00000335551 MT1AP04731 61 aa1.77□□□□□ -2.13
CSMD1-201ENST00000335551 LCE4AQ5TA78 99 aa1.76□□□□□ -2.13
CSMD1-201ENST00000335551 KRTAP9-9Q9BYP9 154 aa1.75□□□□□ -2.13
CSMD1-201ENST00000335551 KRTAP2-2Q9BYT5 123 aa1.75□□□□□ -2.13
CSMD1-201ENST00000335551 LOC100996750A0A140TA64 210 aa1.75□□□□□ -2.13
CSMD1-201ENST00000335551 KRTAP19-2Q3LHN2 52 aa1.74□□□□□ -2.13
CSMD1-201ENST00000335551 FSIP2Q5CZC0 6907 aa1.74□□□□□ -2.13
CSMD1-201ENST00000335551 UBR4Q5T4S7 5183 aa1.72□□□□□ -2.13
CSMD1-201ENST00000335551 KRTAP6-2Q3LI66 62 aa1.71□□□□□ -2.14
CSMD1-201ENST00000335551 KRTAP6-3Q3LI67 103 aa1.7□□□□□ -2.14
CSMD1-201ENST00000335551 FAT4Q6V0I7 4981 aa1.69□□□□□ -2.14
CSMD1-201ENST00000335551 KRTAP4-9Q9BYQ8 210 aa1.66□□□□□ -2.14
CSMD1-201ENST00000335551 MACF1Q9UPN3 7388 aaKnown RBP1.65□□□□□ -2.14
CSMD1-201ENST00000335551 NEBP20929 6669 aa1.65□□□□□ -2.14
CSMD1-201ENST00000335551 OBSCNQ5VST9 7968 aa1.65□□□□□ -2.14
CSMD1-201ENST00000335551 KRTAP4-3Q9BYR4 195 aa1.65□□□□□ -2.15
CSMD1-201ENST00000335551 LCE2AQ5TA79 106 aaPredicted RBP1.64□□□□□ -2.15
CSMD1-201ENST00000335551 GPR98Q8WXG9 6306 aa1.63□□□□□ -2.15
CSMD1-201ENST00000335551 KRTAP19-7Q3SYF9 63 aa1.61□□□□□ -2.15
CSMD1-201ENST00000335551 DSTQ03001 7570 aaKnown RBP1.59□□□□□ -2.15
CSMD1-201ENST00000335551 MUC2Q02817 5179 aa1.58□□□□□ -2.16
CSMD1-201ENST00000335551 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.58□□□□□ -2.16
CSMD1-201ENST00000335551 KRTAP6-1Q3LI64 71 aa1.57□□□□□ -2.16
CSMD1-201ENST00000335551 KRTAP9-4Q9BYQ2 154 aa1.56□□□□□ -2.16
CSMD1-201ENST00000335551 MDN1Q9NU22 5596 aa1.55□□□□□ -2.16
CSMD1-201ENST00000335551 KRTAP9-6A8MVA2 160 aa1.52□□□□□ -2.17
CSMD1-201ENST00000335551 SYNE1Q8NF91 8797 aaKnown RBP1.49□□□□□ -2.17
CSMD1-201ENST00000335551 MUC12Q9UKN1 5478 aa1.48□□□□□ -2.17
CSMD1-201ENST00000335551 USH2AO75445 5202 aa1.47□□□□□ -2.17
CSMD1-201ENST00000335551 SSPOA2VEC9 5147 aa1.44□□□□□ -2.18
CSMD1-201ENST00000335551 FCGBPQ9Y6R7 5405 aaPredicted RBP1.41□□□□□ -2.18
CSMD1-201ENST00000335551 KRTAP4-11Q9BYQ6 195 aa1.39□□□□□ -2.19
CSMD1-201ENST00000335551 KMT2DO14686 5537 aa1.37□□□□□ -2.19
CSMD1-201ENST00000335551 KRTAP20-2Q3LI61 65 aa1.36□□□□□ -2.19
CSMD1-201ENST00000335551 KRTAP5-9P26371 169 aa1.34□□□□□ -2.19
CSMD1-201ENST00000335551 AHNAK2Q8IVF2 5795 aa1.31□□□□□ -2.2
CSMD1-201ENST00000335551 KRTAP4-2Q9BYR5 136 aa1.29□□□□□ -2.2
CSMD1-201ENST00000335551 MUC5ACP98088 5654 aa1.27□□□□□ -2.21
CSMD1-201ENST00000335551 HMCN1Q96RW7 5635 aa1.25□□□□□ -2.21
CSMD1-201ENST00000335551 KRTAP5-4Q6L8H1 288 aa1.24□□□□□ -2.21
CSMD1-201ENST00000335551 AHNAKQ09666 5890 aaKnown RBP1.23□□□□□ -2.21
CSMD1-201ENST00000335551 KRTAP4-6Q9BYQ5 205 aa1.23□□□□□ -2.21
CSMD1-201ENST00000335551 KRTAP5-5Q701N2 237 aaPredicted RBP1.21□□□□□ -2.22
CSMD1-201ENST00000335551 KRTAP4-4Q9BYR3 166 aa1.2□□□□□ -2.22
CSMD1-201ENST00000335551 MUC19Q7Z5P9 8384 aa1.19□□□□□ -2.22
CSMD1-201ENST00000335551 MUC5BQ9HC84 5762 aaPredicted RBP1.17□□□□□ -2.22
CSMD1-201ENST00000335551 PHGR1C9JFL3 82 aa1.15□□□□□ -2.22
CSMD1-201ENST00000335551 KRTAP4-12Q9BQ66 201 aa1.12□□□□□ -2.23
CSMD1-201ENST00000335551 KRTAP5-7Q6L8G8 165 aa1.11□□□□□ -2.23
CSMD1-201ENST00000335551 KRTAP5-3Q6L8H2 238 aa1.07□□□□□ -2.24
CSMD1-201ENST00000335551 KRTAP5-10Q6L8G5 202 aa1.05□□□□□ -2.24
CSMD1-201ENST00000335551 KRTAP5-8O75690 187 aa0.91□□□□□ -2.26
CSMD1-201ENST00000335551 KRTAP5-2Q701N4 177 aa0.9□□□□□ -2.27
CSMD1-201ENST00000335551 KRTAP21-1Q3LI58 79 aa0.89□□□□□ -2.27
CSMD1-201ENST00000335551 KRTAP5-11Q6L8G4 156 aa0.85□□□□□ -2.27
CSMD1-201ENST00000335551 KRTAP5-1Q6L8H4 278 aa0.8□□□□□ -2.28
CSMD1-201ENST00000335551 KRTAP21-2Q3LI59 83 aa0.78□□□□□ -2.28
CSMD1-201ENST00000335551 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.75□□□□□ -2.29
CSMD1-201ENST00000335551 MUC16Q8WXI7 14507 aa0.7□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 108 ms