RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 KRTAP19-6Q3LI70 58 aa5.38□□□□□ -1.55
SHROOM1-201ENST00000319854 MT1LQ93083 61 aa5.36□□□□□ -1.55
SHROOM1-201ENST00000319854 KRTAP4-3Q9BYR4 195 aa5.28□□□□□ -1.56
SHROOM1-201ENST00000319854 MACF1Q9UPN3 7388 aaKnown RBP5.26□□□□□ -1.57
SHROOM1-201ENST00000319854 LCE2DQ5TA82 110 aaPredicted RBP5.24□□□□□ -1.57
SHROOM1-201ENST00000319854 CRCT1Q9UGL9 99 aa5.22□□□□□ -1.57
SHROOM1-201ENST00000319854 LOC100996750A0A140TA64 210 aa5.21□□□□□ -1.58
SHROOM1-201ENST00000319854 SYNE2Q8WXH0 6885 aaKnown RBP5.21□□□□□ -1.58
SHROOM1-201ENST00000319854 MT1GP13640 62 aa5.14□□□□□ -1.59
SHROOM1-201ENST00000319854 SPRR2FQ96RM1 72 aa5.13□□□□□ -1.59
SHROOM1-201ENST00000319854 KRTAP19-3Q7Z4W3 81 aa5.06□□□□□ -1.6
SHROOM1-201ENST00000319854 MDN1Q9NU22 5596 aa5.06□□□□□ -1.6
SHROOM1-201ENST00000319854 MT1MQ8N339 61 aa5.05□□□□□ -1.6
SHROOM1-201ENST00000319854 KRTAP9-2Q9BYQ4 174 aa5.05□□□□□ -1.6
SHROOM1-201ENST00000319854 SYNE1Q8NF91 8797 aaKnown RBP5.02□□□□□ -1.61
SHROOM1-201ENST00000319854 KRTAP19-4Q3LI73 84 aa4.95□□□□□ -1.62
SHROOM1-201ENST00000319854 KRTAP12-4P60329 112 aa4.92□□□□□ -1.62
SHROOM1-201ENST00000319854 OBSCNQ5VST9 7968 aa4.91□□□□□ -1.62
SHROOM1-201ENST00000319854 LCE5AQ5TCM9 118 aa4.88□□□□□ -1.63
SHROOM1-201ENST00000319854 LCE3BQ5TA77 95 aa4.75□□□□□ -1.65
SHROOM1-201ENST00000319854 KRTAP4-9Q9BYQ8 210 aa4.73□□□□□ -1.65
SHROOM1-201ENST00000319854 LCE1AQ5T7P2 110 aa4.68□□□□□ -1.66
SHROOM1-201ENST00000319854 SPRR2EP22531 72 aa4.67□□□□□ -1.66
SHROOM1-201ENST00000319854 SPRR2BP35325 72 aa4.67□□□□□ -1.66
SHROOM1-201ENST00000319854 SPRR2AP35326 72 aa4.67□□□□□ -1.66
SHROOM1-201ENST00000319854 KRTAP6-1Q3LI64 71 aa4.61□□□□□ -1.67
SHROOM1-201ENST00000319854 KRTAP5-9P26371 169 aa4.6□□□□□ -1.67
SHROOM1-201ENST00000319854 KRTAP9-6A0A140TA67 174 aa4.51□□□□□ -1.69
SHROOM1-201ENST00000319854 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.51□□□□□ -1.69
SHROOM1-201ENST00000319854 KRTAP9-7A8MTY7 169 aa4.49□□□□□ -1.69
SHROOM1-201ENST00000319854 SPRR2DP22532 72 aa4.46□□□□□ -1.7
SHROOM1-201ENST00000319854 MT1AP04731 61 aa4.45□□□□□ -1.7
SHROOM1-201ENST00000319854 KRTAP5-5Q701N2 237 aaPredicted RBP4.43□□□□□ -1.7
SHROOM1-201ENST00000319854 PRM1P04553 51 aa4.42□□□□□ -1.7
SHROOM1-201ENST00000319854 KRTAP6-3Q3LI67 103 aa4.38□□□□□ -1.71
SHROOM1-201ENST00000319854 LCE3DQ9BYE3 92 aa4.38□□□□□ -1.71
SHROOM1-201ENST00000319854 LCE3EQ5T5B0 92 aa4.35□□□□□ -1.71
SHROOM1-201ENST00000319854 KRTAP9-4Q9BYQ2 154 aa4.21□□□□□ -1.74
SHROOM1-201ENST00000319854 KRTAP6-2Q3LI66 62 aa4.19□□□□□ -1.74
SHROOM1-201ENST00000319854 KRTAP2-2Q9BYT5 123 aa4.18□□□□□ -1.74
SHROOM1-201ENST00000319854 NEBP20929 6669 aa4.16□□□□□ -1.74
SHROOM1-201ENST00000319854 MT4P47944 62 aa4.06□□□□□ -1.76
SHROOM1-201ENST00000319854 MT3P25713 68 aa4.04□□□□□ -1.76
SHROOM1-201ENST00000319854 LCE1EQ5T753 118 aa4.03□□□□□ -1.76
SHROOM1-201ENST00000319854 KRTAP4-6Q9BYQ5 205 aa4□□□□□ -1.77
SHROOM1-201ENST00000319854 KRTAP5-4Q6L8H1 288 aa3.89□□□□□ -1.79
SHROOM1-201ENST00000319854 HMCN1Q96RW7 5635 aa3.89□□□□□ -1.79
SHROOM1-201ENST00000319854 LCE1DQ5T752 114 aa3.84□□□□□ -1.79
SHROOM1-201ENST00000319854 KRTAP20-2Q3LI61 65 aa3.77□□□□□ -1.81
SHROOM1-201ENST00000319854 LCE4AQ5TA78 99 aa3.69□□□□□ -1.82
SHROOM1-201ENST00000319854 KRTAP20-1Q3LI63 56 aa3.67□□□□□ -1.82
SHROOM1-201ENST00000319854 KRTAP5-2Q701N4 177 aa3.59□□□□□ -1.84
SHROOM1-201ENST00000319854 LCE1FQ5T754 118 aa3.58□□□□□ -1.84
SHROOM1-201ENST00000319854 KRTAP5-3Q6L8H2 238 aa3.53□□□□□ -1.85
SHROOM1-201ENST00000319854 MUC5ACP98088 5654 aa3.51□□□□□ -1.85
SHROOM1-201ENST00000319854 LCE1BQ5T7P3 118 aa3.49□□□□□ -1.85
SHROOM1-201ENST00000319854 MUC19Q7Z5P9 8384 aa3.41□□□□□ -1.86
SHROOM1-201ENST00000319854 KRTAP9-9Q9BYP9 154 aa3.39□□□□□ -1.87
SHROOM1-201ENST00000319854 KRTAP4-11Q9BYQ6 195 aa3.35□□□□□ -1.87
SHROOM1-201ENST00000319854 KRTAP5-10Q6L8G5 202 aa3.17□□□□□ -1.9
SHROOM1-201ENST00000319854 KRTAP4-2Q9BYR5 136 aa3.16□□□□□ -1.9
SHROOM1-201ENST00000319854 KRTAP5-1Q6L8H4 278 aa3.15□□□□□ -1.91
SHROOM1-201ENST00000319854 AHNAK2Q8IVF2 5795 aa3.12□□□□□ -1.91
SHROOM1-201ENST00000319854 LCE1CQ5T751 118 aa3.07□□□□□ -1.92
SHROOM1-201ENST00000319854 KRTAP5-8O75690 187 aa3.02□□□□□ -1.93
SHROOM1-201ENST00000319854 MUC5BQ9HC84 5762 aaPredicted RBP3.01□□□□□ -1.93
SHROOM1-201ENST00000319854 KRTAP4-4Q9BYR3 166 aa2.92□□□□□ -1.94
SHROOM1-201ENST00000319854 KRTAP21-2Q3LI59 83 aa2.91□□□□□ -1.94
SHROOM1-201ENST00000319854 KRTAP5-7Q6L8G8 165 aa2.87□□□□□ -1.95
SHROOM1-201ENST00000319854 GPR98Q8WXG9 6306 aa2.86□□□□□ -1.95
SHROOM1-201ENST00000319854 KRTAP4-12Q9BQ66 201 aa2.83□□□□□ -1.96
SHROOM1-201ENST00000319854 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.79□□□□□ -1.96
SHROOM1-201ENST00000319854 KRTAP21-1Q3LI58 79 aa2.77□□□□□ -1.97
SHROOM1-201ENST00000319854 KRTAP5-11Q6L8G4 156 aa2.63□□□□□ -1.99
SHROOM1-201ENST00000319854 PHGR1C9JFL3 82 aa2.31□□□□□ -2.04
SHROOM1-201ENST00000319854 AHNAKQ09666 5890 aaKnown RBP2.29□□□□□ -2.04
SHROOM1-201ENST00000319854 MUC16Q8WXI7 14507 aa1.49□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 50.2 ms