RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 HERC1Q15751 4861 aa2.15□□□□□ -2.07
SF3B3-201ENST00000302516 LCE1BQ5T7P3 118 aa2.12□□□□□ -2.07
SF3B3-201ENST00000302516 KRTAP9-6A0A140TA67 174 aa2.11□□□□□ -2.07
SF3B3-201ENST00000302516 KRTAP4-3Q9BYR4 195 aa2.1□□□□□ -2.07
SF3B3-201ENST00000302516 LRP2P98164 4655 aa2.1□□□□□ -2.07
SF3B3-201ENST00000302516 KMT2CQ8NEZ4 4911 aaKnown RBP2.09□□□□□ -2.07
SF3B3-201ENST00000302516 HERC2O95714 4834 aa2.09□□□□□ -2.07
SF3B3-201ENST00000302516 KRTAP9-2Q9BYQ4 174 aa2.09□□□□□ -2.08
SF3B3-201ENST00000302516 BIRC6Q9NR09 4857 aa2.09□□□□□ -2.08
SF3B3-201ENST00000302516 LCE1AQ5T7P2 110 aa2.08□□□□□ -2.08
SF3B3-201ENST00000302516 LPAP08519 4548 aa2.07□□□□□ -2.08
SF3B3-201ENST00000302516 KRTAP6-2Q3LI66 62 aa2.06□□□□□ -2.08
SF3B3-201ENST00000302516 HYDINQ4G0P3 5121 aa2.06□□□□□ -2.08
SF3B3-201ENST00000302516 KRTAP20-1Q3LI63 56 aa2.05□□□□□ -2.08
SF3B3-201ENST00000302516 KRTAP9-4Q9BYQ2 154 aa2.03□□□□□ -2.08
SF3B3-201ENST00000302516 KRTAP4-9Q9BYQ8 210 aa2.02□□□□□ -2.09
SF3B3-201ENST00000302516 LCE5AQ5TCM9 118 aa2.02□□□□□ -2.09
SF3B3-201ENST00000302516 LCE2AQ5TA79 106 aaPredicted RBP2.02□□□□□ -2.09
SF3B3-201ENST00000302516 EPPK1P58107 5090 aaKnown RBP2.01□□□□□ -2.09
SF3B3-201ENST00000302516 KRTAP6-1Q3LI64 71 aa2.01□□□□□ -2.09
SF3B3-201ENST00000302516 LCE4AQ5TA78 99 aa2.01□□□□□ -2.09
SF3B3-201ENST00000302516 UBR4Q5T4S7 5183 aa1.99□□□□□ -2.09
SF3B3-201ENST00000302516 KRTAP9-6A8MVA2 160 aa1.99□□□□□ -2.09
SF3B3-201ENST00000302516 RNF213Q63HN8 5207 aa1.99□□□□□ -2.09
SF3B3-201ENST00000302516 ABCA13Q86UQ4 5058 aa1.95□□□□□ -2.1
SF3B3-201ENST00000302516 KRTAP6-3Q3LI67 103 aa1.94□□□□□ -2.1
SF3B3-201ENST00000302516 KRTAP9-7A8MTY7 169 aa1.93□□□□□ -2.1
SF3B3-201ENST00000302516 SYNE1Q8NF91 8797 aaKnown RBP1.92□□□□□ -2.1
SF3B3-201ENST00000302516 KRTAP2-2Q9BYT5 123 aa1.87□□□□□ -2.11
SF3B3-201ENST00000302516 GPR98Q8WXG9 6306 aa1.86□□□□□ -2.11
SF3B3-201ENST00000302516 LCE1CQ5T751 118 aa1.85□□□□□ -2.11
SF3B3-201ENST00000302516 LCE1EQ5T753 118 aa1.85□□□□□ -2.11
SF3B3-201ENST00000302516 LCE1FQ5T754 118 aa1.85□□□□□ -2.11
SF3B3-201ENST00000302516 HMCN2Q8NDA2 5059 aa1.79□□□□□ -2.12
SF3B3-201ENST00000302516 FAT4Q6V0I7 4981 aa1.78□□□□□ -2.12
SF3B3-201ENST00000302516 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.78□□□□□ -2.12
SF3B3-201ENST00000302516 KRTAP9-9Q9BYP9 154 aa1.73□□□□□ -2.13
SF3B3-201ENST00000302516 MUC2Q02817 5179 aa1.71□□□□□ -2.14
SF3B3-201ENST00000302516 SYNE2Q8WXH0 6885 aaKnown RBP1.7□□□□□ -2.14
SF3B3-201ENST00000302516 KRTAP5-9P26371 169 aa1.68□□□□□ -2.14
SF3B3-201ENST00000302516 USH2AO75445 5202 aa1.67□□□□□ -2.14
SF3B3-201ENST00000302516 FSIP2Q5CZC0 6907 aa1.65□□□□□ -2.14
SF3B3-201ENST00000302516 AHNAKQ09666 5890 aaKnown RBP1.65□□□□□ -2.15
SF3B3-201ENST00000302516 KMT2DO14686 5537 aa1.64□□□□□ -2.15
SF3B3-201ENST00000302516 KRTAP4-11Q9BYQ6 195 aa1.64□□□□□ -2.15
SF3B3-201ENST00000302516 MDN1Q9NU22 5596 aa1.63□□□□□ -2.15
SF3B3-201ENST00000302516 AHNAK2Q8IVF2 5795 aa1.62□□□□□ -2.15
SF3B3-201ENST00000302516 NEBP20929 6669 aa1.62□□□□□ -2.15
SF3B3-201ENST00000302516 MUC12Q9UKN1 5478 aa1.6□□□□□ -2.15
SF3B3-201ENST00000302516 KRTAP20-2Q3LI61 65 aa1.59□□□□□ -2.15
SF3B3-201ENST00000302516 MACF1Q9UPN3 7388 aaKnown RBP1.58□□□□□ -2.16
SF3B3-201ENST00000302516 KRTAP5-4Q6L8H1 288 aa1.56□□□□□ -2.16
SF3B3-201ENST00000302516 KRTAP5-5Q701N2 237 aaPredicted RBP1.55□□□□□ -2.16
SF3B3-201ENST00000302516 SSPOA2VEC9 5147 aa1.55□□□□□ -2.16
SF3B3-201ENST00000302516 KRTAP4-6Q9BYQ5 205 aa1.53□□□□□ -2.17
SF3B3-201ENST00000302516 OBSCNQ5VST9 7968 aa1.5□□□□□ -2.17
SF3B3-201ENST00000302516 HMCN1Q96RW7 5635 aa1.5□□□□□ -2.17
SF3B3-201ENST00000302516 FCGBPQ9Y6R7 5405 aaPredicted RBP1.45□□□□□ -2.18
SF3B3-201ENST00000302516 KRTAP4-2Q9BYR5 136 aa1.41□□□□□ -2.18
SF3B3-201ENST00000302516 KRTAP4-4Q9BYR3 166 aa1.41□□□□□ -2.18
SF3B3-201ENST00000302516 DSTQ03001 7570 aaKnown RBP1.39□□□□□ -2.19
SF3B3-201ENST00000302516 MUC19Q7Z5P9 8384 aa1.37□□□□□ -2.19
SF3B3-201ENST00000302516 MUC5ACP98088 5654 aa1.37□□□□□ -2.19
SF3B3-201ENST00000302516 KRTAP5-3Q6L8H2 238 aa1.34□□□□□ -2.19
SF3B3-201ENST00000302516 KRTAP4-12Q9BQ66 201 aa1.34□□□□□ -2.2
SF3B3-201ENST00000302516 MUC5BQ9HC84 5762 aaPredicted RBP1.34□□□□□ -2.2
SF3B3-201ENST00000302516 KRTAP5-10Q6L8G5 202 aa1.24□□□□□ -2.21
SF3B3-201ENST00000302516 KRTAP5-2Q701N4 177 aa1.2□□□□□ -2.22
SF3B3-201ENST00000302516 PHGR1C9JFL3 82 aa1.15□□□□□ -2.22
SF3B3-201ENST00000302516 KRTAP5-11Q6L8G4 156 aa1.12□□□□□ -2.23
SF3B3-201ENST00000302516 KRTAP5-8O75690 187 aa1.09□□□□□ -2.24
SF3B3-201ENST00000302516 KRTAP5-7Q6L8G8 165 aa1.07□□□□□ -2.24
SF3B3-201ENST00000302516 KRTAP5-1Q6L8H4 278 aa1.06□□□□□ -2.24
SF3B3-201ENST00000302516 KRTAP21-1Q3LI58 79 aa1.04□□□□□ -2.24
SF3B3-201ENST00000302516 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.03□□□□□ -2.25
SF3B3-201ENST00000302516 KRTAP21-2Q3LI59 83 aa1.03□□□□□ -2.25
SF3B3-201ENST00000302516 MUC16Q8WXI7 14507 aa0.7□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 48.4 ms