RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 MT3P25713 68 aa5.35□□□□□ -1.55
SHANK1-201ENST00000293441 KRTAP4-3Q9BYR4 195 aa5.34□□□□□ -1.55
SHANK1-201ENST00000293441 KMT2CQ8NEZ4 4911 aaKnown RBP5.29□□□□□ -1.56
SHANK1-201ENST00000293441 LCE1BQ5T7P3 118 aa5.26□□□□□ -1.57
SHANK1-201ENST00000293441 LCE1DQ5T752 114 aa5.23□□□□□ -1.57
SHANK1-201ENST00000293441 PRM1P04553 51 aa5.18□□□□□ -1.58
SHANK1-201ENST00000293441 LCE2AQ5TA79 106 aaPredicted RBP5.14□□□□□ -1.59
SHANK1-201ENST00000293441 KRTAP9-7A8MTY7 169 aa5.05□□□□□ -1.6
SHANK1-201ENST00000293441 KRTAP19-7Q3SYF9 63 aa5.04□□□□□ -1.6
SHANK1-201ENST00000293441 KRTAP20-1Q3LI63 56 aa5.04□□□□□ -1.6
SHANK1-201ENST00000293441 MT1AP04731 61 aa5□□□□□ -1.61
SHANK1-201ENST00000293441 EPPK1P58107 5090 aaKnown RBP4.98□□□□□ -1.61
SHANK1-201ENST00000293441 LCE5AQ5TCM9 118 aa4.98□□□□□ -1.61
SHANK1-201ENST00000293441 KRTAP4-9Q9BYQ8 210 aa4.98□□□□□ -1.61
SHANK1-201ENST00000293441 FSIP2Q5CZC0 6907 aa4.95□□□□□ -1.62
SHANK1-201ENST00000293441 KRTAP2-3P0C7H8 128 aa4.91□□□□□ -1.62
SHANK1-201ENST00000293441 KRTAP2-4Q9BYR9 128 aa4.91□□□□□ -1.62
SHANK1-201ENST00000293441 KRTAP2-1Q9BYU5 128 aa4.91□□□□□ -1.62
SHANK1-201ENST00000293441 HMCN2Q8NDA2 5059 aa4.91□□□□□ -1.62
SHANK1-201ENST00000293441 ABCA13Q86UQ4 5058 aa4.89□□□□□ -1.63
SHANK1-201ENST00000293441 FAT4Q6V0I7 4981 aa4.86□□□□□ -1.63
SHANK1-201ENST00000293441 KRTAP6-3Q3LI67 103 aa4.82□□□□□ -1.64
SHANK1-201ENST00000293441 SYNE2Q8WXH0 6885 aaKnown RBP4.81□□□□□ -1.64
SHANK1-201ENST00000293441 LCE1AQ5T7P2 110 aa4.76□□□□□ -1.65
SHANK1-201ENST00000293441 KRTAP6-2Q3LI66 62 aa4.74□□□□□ -1.65
SHANK1-201ENST00000293441 KRTAP6-1Q3LI64 71 aa4.74□□□□□ -1.65
SHANK1-201ENST00000293441 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.74□□□□□ -1.65
SHANK1-201ENST00000293441 RNF213Q63HN8 5207 aa4.73□□□□□ -1.65
SHANK1-201ENST00000293441 LCE1CQ5T751 118 aa4.69□□□□□ -1.66
SHANK1-201ENST00000293441 LCE1EQ5T753 118 aa4.69□□□□□ -1.66
SHANK1-201ENST00000293441 LCE1FQ5T754 118 aa4.69□□□□□ -1.66
SHANK1-201ENST00000293441 KRTAP9-4Q9BYQ2 154 aa4.67□□□□□ -1.66
SHANK1-201ENST00000293441 LCE4AQ5TA78 99 aa4.66□□□□□ -1.66
SHANK1-201ENST00000293441 UBR4Q5T4S7 5183 aa4.62□□□□□ -1.67
SHANK1-201ENST00000293441 KRTAP2-2Q9BYT5 123 aa4.61□□□□□ -1.67
SHANK1-201ENST00000293441 MUC2Q02817 5179 aa4.6□□□□□ -1.67
SHANK1-201ENST00000293441 SYNE1Q8NF91 8797 aaKnown RBP4.57□□□□□ -1.68
SHANK1-201ENST00000293441 KRTAP9-6A8MVA2 160 aa4.56□□□□□ -1.68
SHANK1-201ENST00000293441 OBSCNQ5VST9 7968 aa4.36□□□□□ -1.71
SHANK1-201ENST00000293441 KRTAP9-9Q9BYP9 154 aa4.18□□□□□ -1.74
SHANK1-201ENST00000293441 KRTAP4-6Q9BYQ5 205 aa4□□□□□ -1.77
SHANK1-201ENST00000293441 KRTAP5-9P26371 169 aa3.98□□□□□ -1.77
SHANK1-201ENST00000293441 KMT2DO14686 5537 aa3.97□□□□□ -1.77
SHANK1-201ENST00000293441 FCGBPQ9Y6R7 5405 aaPredicted RBP3.94□□□□□ -1.78
SHANK1-201ENST00000293441 USH2AO75445 5202 aa3.93□□□□□ -1.78
SHANK1-201ENST00000293441 MACF1Q9UPN3 7388 aaKnown RBP3.89□□□□□ -1.79
SHANK1-201ENST00000293441 KRTAP20-2Q3LI61 65 aa3.88□□□□□ -1.79
SHANK1-201ENST00000293441 KRTAP4-11Q9BYQ6 195 aa3.86□□□□□ -1.79
SHANK1-201ENST00000293441 DSTQ03001 7570 aaKnown RBP3.85□□□□□ -1.79
SHANK1-201ENST00000293441 NEBP20929 6669 aa3.8□□□□□ -1.8
SHANK1-201ENST00000293441 SSPOA2VEC9 5147 aa3.75□□□□□ -1.81
SHANK1-201ENST00000293441 KRTAP4-12Q9BQ66 201 aa3.69□□□□□ -1.82
SHANK1-201ENST00000293441 KRTAP4-2Q9BYR5 136 aa3.69□□□□□ -1.82
SHANK1-201ENST00000293441 KRTAP4-4Q9BYR3 166 aa3.68□□□□□ -1.82
SHANK1-201ENST00000293441 KRTAP5-4Q6L8H1 288 aa3.6□□□□□ -1.83
SHANK1-201ENST00000293441 MUC12Q9UKN1 5478 aa3.5□□□□□ -1.85
SHANK1-201ENST00000293441 GPR98Q8WXG9 6306 aa3.43□□□□□ -1.86
SHANK1-201ENST00000293441 MUC19Q7Z5P9 8384 aa3.41□□□□□ -1.86
SHANK1-201ENST00000293441 KRTAP5-5Q701N2 237 aaPredicted RBP3.34□□□□□ -1.87
SHANK1-201ENST00000293441 MDN1Q9NU22 5596 aa3.25□□□□□ -1.89
SHANK1-201ENST00000293441 KRTAP5-3Q6L8H2 238 aa3.15□□□□□ -1.91
SHANK1-201ENST00000293441 KRTAP5-8O75690 187 aa2.92□□□□□ -1.94
SHANK1-201ENST00000293441 MUC5ACP98088 5654 aa2.9□□□□□ -1.94
SHANK1-201ENST00000293441 PHGR1C9JFL3 82 aa2.86□□□□□ -1.95
SHANK1-201ENST00000293441 KRTAP5-10Q6L8G5 202 aa2.7□□□□□ -1.98
SHANK1-201ENST00000293441 HMCN1Q96RW7 5635 aa2.68□□□□□ -1.98
SHANK1-201ENST00000293441 KRTAP5-2Q701N4 177 aa2.67□□□□□ -1.98
SHANK1-201ENST00000293441 AHNAK2Q8IVF2 5795 aa2.63□□□□□ -1.99
SHANK1-201ENST00000293441 KRTAP5-1Q6L8H4 278 aa2.46□□□□□ -2.02
SHANK1-201ENST00000293441 MUC5BQ9HC84 5762 aaPredicted RBP2.46□□□□□ -2.02
SHANK1-201ENST00000293441 KRTAP5-11Q6L8G4 156 aa2.45□□□□□ -2.02
SHANK1-201ENST00000293441 KRTAP21-2Q3LI59 83 aa2.31□□□□□ -2.04
SHANK1-201ENST00000293441 KRTAP5-7Q6L8G8 165 aa2.28□□□□□ -2.04
SHANK1-201ENST00000293441 AHNAKQ09666 5890 aaKnown RBP2.21□□□□□ -2.06
SHANK1-201ENST00000293441 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.05□□□□□ -2.08
SHANK1-201ENST00000293441 KRTAP21-1Q3LI58 79 aa2.02□□□□□ -2.09
SHANK1-201ENST00000293441 MUC16Q8WXI7 14507 aa1.61□□□□□ -2.15
Retrieved 77 of 20,778 RNA–protein pairs in 7.9 ms