RNA–Protein interactions for RNA: ENST00000288022.1

PDF-201, Transcript of peptide deformylase, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDF, Length 1,158 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDF-201ENST00000288022 A6NED7 52 aa9□□□□□ -0.97
PDF-201ENST00000288022 PP632Q6XCG6 107 aa8.98□□□□□ -0.97
PDF-201ENST00000288022 MT1LQ93083 61 aa8.97□□□□□ -0.97
PDF-201ENST00000288022 RPS28P62857 69 aaKnown RBP8.96□□□□□ -0.98
PDF-201ENST00000288022 KRTAP25-1Q3LHN0 102 aa8.92□□□□□ -0.98
PDF-201ENST00000288022 DSTQ03001 7570 aaKnown RBP8.89□□□□□ -0.99
PDF-201ENST00000288022 MT1MQ8N339 61 aa8.87□□□□□ -0.99
PDF-201ENST00000288022 KRTAP12-3P60328 96 aa8.85□□□□□ -0.99
PDF-201ENST00000288022 KRTAP4-3Q9BYR4 195 aa8.67□□□□□ -1.02
PDF-201ENST00000288022 CDC42SE1Q9NRR8 79 aa8.65□□□□□ -1.02
PDF-201ENST00000288022 KRTAP23-1A1A580 65 aa8.55□□□□□ -1.04
PDF-201ENST00000288022 KRTAP4-9Q9BYQ8 210 aa8.55□□□□□ -1.04
PDF-201ENST00000288022 KRTAP4-7Q9BYR0 210 aa8.55□□□□□ -1.04
PDF-201ENST00000288022 ROMO1P60602 79 aa8.52□□□□□ -1.05
PDF-201ENST00000288022 LCE4AQ5TA78 99 aa8.42□□□□□ -1.06
PDF-201ENST00000288022 LCE1DQ5T752 114 aa8.36□□□□□ -1.07
PDF-201ENST00000288022 MT4P47944 62 aa8.34□□□□□ -1.07
PDF-201ENST00000288022 KRTAP15-1Q3LI76 137 aa8.34□□□□□ -1.07
PDF-201ENST00000288022 KRTAP19-4Q3LI73 84 aa8.31□□□□□ -1.08
PDF-201ENST00000288022 GPR98Q8WXG9 6306 aa8.3□□□□□ -1.08
PDF-201ENST00000288022 KRTAP5-4Q6L8H1 288 aa8.28□□□□□ -1.08
PDF-201ENST00000288022 LCE3CQ5T5A8 94 aa8.16□□□□□ -1.1
PDF-201ENST00000288022 HMCN1Q96RW7 5635 aa8.13□□□□□ -1.11
PDF-201ENST00000288022 LOC100996750A0A140TA64 210 aa8.09□□□□□ -1.11
PDF-201ENST00000288022 KRTAP4-6Q9BYQ5 205 aa8.09□□□□□ -1.11
PDF-201ENST00000288022 KRTAP5-5Q701N2 237 aaPredicted RBP8.07□□□□□ -1.12
PDF-201ENST00000288022 BRK1Q8WUW1 75 aa7.97□□□□□ -1.13
PDF-201ENST00000288022 KRTAP12-4P60329 112 aa7.87□□□□□ -1.15
PDF-201ENST00000288022 KRTAP20-2Q3LI61 65 aa7.82□□□□□ -1.16
PDF-201ENST00000288022 SPRR5A0A1B0GTR4 108 aa7.81□□□□□ -1.16
PDF-201ENST00000288022 AHNAK2Q8IVF2 5795 aa7.77□□□□□ -1.17
PDF-201ENST00000288022 SYNE1Q8NF91 8797 aaKnown RBP7.7□□□□□ -1.18
PDF-201ENST00000288022 KRTAP9-6A8MVA2 160 aa7.67□□□□□ -1.18
PDF-201ENST00000288022 MT1AP04731 61 aa7.63□□□□□ -1.19
PDF-201ENST00000288022 KRTAP5-10Q6L8G5 202 aa7.61□□□□□ -1.19
PDF-201ENST00000288022 KRTAP6-1Q3LI64 71 aa7.57□□□□□ -1.2
PDF-201ENST00000288022 KRTAP5-3Q6L8H2 238 aa7.56□□□□□ -1.2
PDF-201ENST00000288022 PMAIP1Q13794 54 aa7.49□□□□□ -1.21
PDF-201ENST00000288022 KRTAP9-4Q9BYQ2 154 aa7.35□□□□□ -1.23
PDF-201ENST00000288022 KRTAP5-7Q6L8G8 165 aa7.3□□□□□ -1.24
PDF-201ENST00000288022 KRTAP5-2Q701N4 177 aa7.29□□□□□ -1.24
PDF-201ENST00000288022 KRTAP6-2Q3LI66 62 aa7.2□□□□□ -1.26
PDF-201ENST00000288022 PRAC1Q96KF2 57 aa7.17□□□□□ -1.26
PDF-201ENST00000288022 KRTAP4-11Q9BYQ6 195 aa7.09□□□□□ -1.27
PDF-201ENST00000288022 PRO0628Q9UI54 55 aa7.07□□□□□ -1.28
PDF-201ENST00000288022 MT3P25713 68 aa6.98□□□□□ -1.29
PDF-201ENST00000288022 KRTAP5-8O75690 187 aa6.83□□□□□ -1.32
PDF-201ENST00000288022 OBSCNQ5VST9 7968 aa6.76□□□□□ -1.33
PDF-201ENST00000288022 KTN1-AS1Q86SY8 53 aa6.74□□□□□ -1.33
PDF-201ENST00000288022 SVIPQ8NHG7 77 aa6.52□□□□□ -1.37
PDF-201ENST00000288022 KRTAP5-1Q6L8H4 278 aa6.5□□□□□ -1.37
PDF-201ENST00000288022 KRTAP9-9Q9BYP9 154 aa6.47□□□□□ -1.37
PDF-201ENST00000288022 AHNAKQ09666 5890 aaKnown RBP6.44□□□□□ -1.38
PDF-201ENST00000288022 MUC5BQ9HC84 5762 aaPredicted RBP6.39□□□□□ -1.39
PDF-201ENST00000288022 MUC5ACP98088 5654 aa6.38□□□□□ -1.39
PDF-201ENST00000288022 LCE1EQ5T753 118 aa6.32□□□□□ -1.4
PDF-201ENST00000288022 LUZP6Q538Z0 58 aa6.06□□□□□ -1.44
PDF-201ENST00000288022 LCE1BQ5T7P3 118 aa6□□□□□ -1.45
PDF-201ENST00000288022 KRTAP4-2Q9BYR5 136 aa5.95□□□□□ -1.46
PDF-201ENST00000288022 LCE3DQ9BYE3 92 aa5.94□□□□□ -1.46
PDF-201ENST00000288022 LCE1CQ5T751 118 aa5.87□□□□□ -1.47
PDF-201ENST00000288022 LCE3EQ5T5B0 92 aa5.63□□□□□ -1.51
PDF-201ENST00000288022 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.35□□□□□ -1.55
PDF-201ENST00000288022 KRTAP4-12Q9BQ66 201 aa5.35□□□□□ -1.55
PDF-201ENST00000288022 KRTAP5-11Q6L8G4 156 aa5.29□□□□□ -1.56
PDF-201ENST00000288022 H3BS24 57 aa5.08□□□□□ -1.6
PDF-201ENST00000288022 LCE1FQ5T754 118 aa5.08□□□□□ -1.6
PDF-201ENST00000288022 NDUFAF8A1L188 74 aa5.02□□□□□ -1.61
PDF-201ENST00000288022 KRTAP21-2Q3LI59 83 aa4.97□□□□□ -1.61
PDF-201ENST00000288022 PHGR1C9JFL3 82 aa4.56□□□□□ -1.68
PDF-201ENST00000288022 KRTAP4-4Q9BYR3 166 aa4.56□□□□□ -1.68
PDF-201ENST00000288022 PRM1P04553 51 aa4.37□□□□□ -1.71
PDF-201ENST00000288022 MUC19Q7Z5P9 8384 aa4.16□□□□□ -1.74
PDF-201ENST00000288022 A0A0A0MQY5 61 aa4.05□□□□□ -1.76
PDF-201ENST00000288022 INE1O15225 51 aa4.04□□□□□ -1.76
PDF-201ENST00000288022 KRTAP21-1Q3LI58 79 aa3.37□□□□□ -1.87
PDF-201ENST00000288022 MUC16Q8WXI7 14507 aa2.97□□□□□ -1.93
Retrieved 77 of 20,778 RNA–protein pairs in 5.5 ms